Scaffold Ga0208432_1003612

Overview

Basic Information

• Taxon OID: 3300027380
• Scaffold ID: Ga0208432_1003612
• Source Dataset Name: Deep subsurface shale carbon reservoir microbial communities from Ohio, USA - Utica-2 Time Series LW 2014_7_11 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3057
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Deep Subsurface → Deep Subsurface Shale Carbon Reservoir Microbial Communities From Ohio And West Virginia, Usa

Source Dataset Sampling Location

• Location Name: USA: Ohio
• Coordinates
  • Lat. (^o): 40.178
  • Long. (^o): -81.073

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003964	Metagenome	459	Y
F104758	Metagenome	100	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0208432_10036122	F003964	GGAG	VAEVSARVEVVGLKDALKTLNKIDKSLRREITKDYKKIVQPVIDDANKFVPTGVPLSGMARNWQTRSGFQILPWIPGMKQKIAAKINTRAIKEYNGNTTNVGTFAIQWKGATGTMFDTSMAGSLGRALTARYGSRSRVMWKAYEQRQGDVMSEMEQLVKRVMDEANRETA
Ga0208432_10036124	F104758	N/A	MPGVAVVDSGNYDLQIETGFIVNAFTLNNVTSGVLDNTFFVLDGNTEYANVMADTTNIKVRRGRRDVGDQFSAGTMTFTIRDVDGIFNPFDDNSPYYDTPQSKPGLAPMRKVQLIRYDIAGDPEYLFSGYVVNYDYNFALGGLDTVTVYCADQFYLLSQTFMNELNVTSETSGERIETVLDLPEVNFPALQRNIATGTVNLGHDSNYTVPAGTNVLQYITQINETAEFGRVFMSRDGTLTFQERIGTTLSASVADFHDDGTEINYDGLGISFEANEVINRSVVTGLDGKTATATNAGSIATYFIQTNSILNSLLHEQTAINTAASYLLNPQPEPRFTSVETKFLMLTDAQKDTLATVEIGDTIAIEKTFPSGAGTTQLAQDLS