Scaffold Ga0209004_1003202

Overview

Basic Information

• Taxon OID: 3300027376
• Scaffold ID: Ga0209004_1003202
• Source Dataset Name: Forest soil microbial communities from Davy Crockett National Forest, Groveton, Texas, USA - Texas A ecozone_RefH0_M1 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2082
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Candidatus Angelobacter → unclassified Candidatus Angelobacter → Candidatus Angelobacter sp. Gp1-AA117 (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil → Forest Soil Microbial Communities From Multiple Locations In Canada And Usa

Source Dataset Sampling Location

• Location Name: Davy Crockett National Forest, Groveton, Texas, USA
• Coordinates
  • Lat. (^o): 31.11
  • Long. (^o): -95.15

Associated Families

Family	Category	Number of Sequences	3D Structure?
F071506	Metagenome / Metatranscriptome	122	Y
F092591	Metagenome / Metatranscriptome	107	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209004_10032021	F092591	AGGAG	MKIFTKVILALALVSSLAAQQPAKDTADQPPKDQSAKKEILAGREGNTENFFKLAFVMYELEDGKRTNQRDYMMIGRTDNQPSYIRVSTRVPIYTEVKGGDKAYTYIDAGLNIRCSSKEQVDRKLQFHCDIEMSSFIRPEQIANATGKAGPEAPVMRTTRTESWALLTPGKPALLTTVDDIN
Ga0209004_10032022	F071506	AGGA	MADQEKDRKTQIDDMLDSLLANYSSAEPRPGLETRILANLREAEEKKASQGWWDFKWIWAGTVAAAIIVVVVLISGRHRVEPPTHVMVKTRPAVPQPEIQPQAPGARNETVRIRPRKALAPTRPHNAALALNERPAVFPTPTPLSEQEKLLLSYLAGTPREEIIAESHPDEPPAVGDQDQTKAIPDLTFIPQKFGNTR