Scaffold Ga0209010_1000172

Overview

Basic Information

• Taxon OID: 3300027370
• Scaffold ID: Ga0209010_1000172
• Source Dataset Name: Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM1_O3 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 24629
• Total Scaffold Genes: 32
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 24 (75.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil → Forest Soil Microbial Communities From Multiple Locations In Canada And Usa

Source Dataset Sampling Location

• Location Name: Thunder Bay, Ontario, Canada
• Coordinates
  • Lat. (^o): 49.08
  • Long. (^o): -89.38

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000042	Metagenome / Metatranscriptome	3762	Y
F000281	Metagenome / Metatranscriptome	1382	Y
F019863	Metagenome / Metatranscriptome	227	Y
F026323	Metagenome / Metatranscriptome	198	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209010_100017211	F019863	GGAG	MSYTEARNHFEKARASAVDKGVIEMLDGLKHLSHAIEEDLRTLEQSIRNIRDIQSHMQIPNSFT
Ga0209010_10001722	F000042	AGGAG	MSVTKFVVKVSRGGTRAAEYVRRVDSIPMLMTTSRKMALLMGRFTAEDAIKSLQSSRCSPELESVLVSA
Ga0209010_10001725	F026323	GGAGG	MDNQELQNSIATIAETLITTQRNLVTVSRSLWAVRISIRELHPDFEEMYLNHFAEPEHAFDTMRDNLLDYGRELADIARRLRAESSQ
Ga0209010_10001727	F000281	N/A	MPNPVKERIVKLREEIAQISEANQLYLRSGKKKLHGEAGDHARRLQRLQEILDELVALTDWKKL