Scaffold Ga0209010_1000030

Overview

Basic Information

• Taxon OID: 3300027370
• Scaffold ID: Ga0209010_1000030
• Source Dataset Name: Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM1_O3 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 77820
• Total Scaffold Genes: 62
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 52 (83.87%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil → Forest Soil Microbial Communities From Multiple Locations In Canada And Usa

Source Dataset Sampling Location

• Location Name: Thunder Bay, Ontario, Canada
• Coordinates
  • Lat. (^o): 49.08
  • Long. (^o): -89.38

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002088	Metagenome / Metatranscriptome	595	Y
F009349	Metagenome / Metatranscriptome	319	Y
F031637	Metagenome / Metatranscriptome	182	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209010_100003020	F031637	GGAG	MKTKKYGAADLRVPDSTREHNVQREIDSFLRAINSYPDRFAREPYLSFQQHLSSIVTAEQPPGIDEDLRR
Ga0209010_100003045	F002088	GGAGG	MMRDLQLNRGDICGDPTGLRVKVEDVDDYDYVHFSVIEFSEDGEGEAGSGEMSHVAFAHRFTKLGNTFSNRPAA
Ga0209010_100003061	F009349	AGGAGG	MKRALSLIFLFCSLPGLLAAQIGVYQHGSVVRMHMGECIPAGHGFMVAFGGPSNSIGPESCPEYTLVSDNVVFVIVGKLSNSLIPLAQTIEFRFHKNELAVRVDDAKHETKFAIKEMMVRSEWDRLQRHIDEKMRASDDHEPEVRSR