Scaffold Ga0209010

Basic Information
Taxon OID	3300027370 Open in IMG/M
Scaffold ID	Ga0209010_1000018 Open in IMG/M
Source Dataset Name	Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM1_O3 (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300027370 Open in IMG/M

Scaffold ID

Ga0209010_1000018 Open in IMG/M

Source Dataset Name

Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM1_O3 (SPAdes)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	106305
Total Scaffold Genes	103 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	79 (76.70%)
Novel Protein Genes	5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	3 (60.00%)
Associated Families	5

Scaffold Components

Scaffold Length (bps)

106305

Total Scaffold Genes

103 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

79 (76.70%)

Novel Protein Genes

5 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

3 (60.00%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	(Source: IMG/M)

Taxonomy

All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae

(Source: IMG/M)

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil → Forest Soil Microbial Communities From Multiple Locations In Canada And Usa

Source Dataset Ecosystem

Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil → Forest Soil Microbial Communities From Multiple Locations In Canada And Usa

Source Dataset Sampling Location
Location Name	Thunder Bay, Ontario, Canada
Coordinates	Lat. (^o)	49.08	Long. (^o)	-89.38	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

Thunder Bay, Ontario, Canada

Coordinates

Lat. (^o)

49.08

Long. (^o)

-89.38

Alt. (m)

Depth (m)

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F001348	Metagenome / Metatranscriptome	717	Y
F002696	Metagenome / Metatranscriptome	536	Y
F006195	Metagenome / Metatranscriptome	379	Y
F009287	Metagenome / Metatranscriptome	320	Y
F013941	Metagenome / Metatranscriptome	267	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209010_100001810	F013941	GGA	MRALPKFLAAFFFLGALGNAQTAPYADAGIGVNGLGFQSPYYTADVGVDWGDLRPTFFEAEAGADTANPNSLNTGVTFRAHGVVMWRATPHWRLGGGIHFSDLFTSKYGKQQVWPTLGAMFEKQWFRLNAQLLIPTSPNALVGPLFDMRMHLKKRFYLRERVGIYWYVTDLEPSSRRASAVADFGILYVFR
Ga0209010_100001829	F002696	GAG	MSEETAVVGPDKVHALVQLLRTRSYEEIRQRMYDNPPGSPWWSACKIELDIRNGEQIAAALSATSHVLEKLRGSTQHFEQLAETLHESTKEVIDMLAGTKEAGRRLEIAVYVTIGITLVQLFNLIFEVFRKR
Ga0209010_100001839	F001348	N/A	MFTAEEQRALQAVAVQLMNGDEVALDDQRLRVKRVGSGRLRMVPFRLGGRMFEAIEQNPMKPSRWGQLAREKHQVVQFRDVATHKYVAVAVDGEITEYGRG
Ga0209010_100001845	F006195	N/A	MAKSEKSFQLKILYGEGDAEVVASQAVSIQKAGHQVETAVGRKGIDEAVRRGGFDLVILGPTLTRNDRHHLPYVIKKTQSATRVLVMHTDGEGHPAVDANTDTGRSMADVVAKIASLMTNGEIASNGLVKSAAAGR
Ga0209010_100001889	F009287	GGA	MRRNVVAVLLTLSFLGCGGSPKSPVPAAGFINQTRHSDADLNAIWTEAQQSVAQQIDLNPLQQLSNNVPPNTRPGDPRALSVEPHQLLVAAEPDVSSEVLFAATGQQRANPTGMIACPAPCSVRYSTAYSFYQPELTKYASSWEFSGDNFDVILEYEFENHILSALGYNMTWR

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0209010_1000018

Overview

Ecosystem & Geography

Associated Families

Sequences