Scaffold Ga0209010_1000016

Overview

Basic Information

• Taxon OID: 3300027370
• Scaffold ID: Ga0209010_1000016
• Source Dataset Name: Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM1_O3 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 109760
• Total Scaffold Genes: 84
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 72 (85.71%)
• Novel Protein Genes: 8
• Novel Protein Genes with Ribosome Binding Sites (RBS): 8 (100.00%)
• Associated Families: 8

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil → Forest Soil Microbial Communities From Multiple Locations In Canada And Usa

Source Dataset Sampling Location

• Location Name: Thunder Bay, Ontario, Canada
• Coordinates
  • Lat. (^o): 49.08
  • Long. (^o): -89.38

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000042	Metagenome / Metatranscriptome	3762	Y
F000065	Metagenome / Metatranscriptome	2788	Y
F001021	Metagenome / Metatranscriptome	804	Y
F001567	Metagenome / Metatranscriptome	670	Y
F001851	Metagenome / Metatranscriptome	626	Y
F003669	Metagenome / Metatranscriptome	474	Y
F013120	Metagenome / Metatranscriptome	274	Y
F022717	Metagenome / Metatranscriptome	213	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209010_100001610	F022717	GGAG	MENTIMSVVGCLILCASLFSQEQPRELRGGGHLLGETAGQFFSEGFVGDMLRACQGKDWKSVSQLSKNVGNVSKTNAKDYCAKEMLAKQQATSGTRLEYDGRGDEETMRADTFIFDGGHLVKIDMIYVAPRANIEGYRPKSFGELFAGLREAYGPPSKSYSEPVLNAYGVKYDAHRAVWMGNQDVISIIEQPGEDGRTEIIAETLAEYNRAAQAPKTANPLR
Ga0209010_100001618	F000065	AGGA	MSHVTKTIPKLRKAPQPPLSYPGATPDADRAKKPALSEPSATDQELNPGDRVEGLGNFGKPTGEFGTVERANEEDAIVKWDDDGRMRLHQPSLKKV
Ga0209010_100001625	F003669	AGGAGG	MCPFCLATMGFVVAGAVSTGVLAALAVKVSRKRNGAEEIISNLNNKEK
Ga0209010_100001629	F001851	AGGAG	MNLTSFSFGLLIVLFTILLLRRMHNLKPRIAGYGSQRMCPSCGLITSRLKPCCLECGKSLTSVTVTPILEK
Ga0209010_100001630	F000042	AGAAGG	MKNTKFVVKLSRGATRAPEFVLRIDRTPIQMTTNRKLALVMGKFAAEDTINSLQNSRRTPELIAVQVECGQLAV
Ga0209010_100001631	F013120	GGAGG	MEYFRFDHPPDRLILCDRSNCETIADYLEINEHGREDFVCAAHTSSERHASVLPKGVPNGERHGSRTTP
Ga0209010_100001659	F001567	AGG	MERSLIWIESDANGWACSNCRWKFPVPTLLSGEEAKGAYDRLAAAKFRQHICESATSLTATLEAKRDANTAFAERARTLIKRGYKPKVAVELVLQETEIEHGNDPRMMEKARADADDFLQRVRKGLI
Ga0209010_100001670	F001021	AGGAG	MKKAIVGTVLSVFLSFAAGIAVADRVHDWHDLEDVHNHVLEAIHEMESARAANHYDMAGHGAKAEEDLRRAEHELHDAIDSARMAR