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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300027370 Open in IMG/M |
| Scaffold ID | Ga0209010_1000009 Open in IMG/M |
| Source Dataset Name | Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM1_O3 (SPAdes) |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 215722 |
| Total Scaffold Genes | 206 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 150 (72.82%) |
| Novel Protein Genes | 9 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 7 (77.78%) |
| Associated Families | 9 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae | (Source: IMG/M) |
| Source Dataset Ecosystem |
|---|
| Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil → Forest Soil Microbial Communities From Multiple Locations In Canada And Usa |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Thunder Bay, Ontario, Canada | |||||||
| Coordinates | Lat. (o) | 49.08 | Long. (o) | -89.38 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F000192 | Metagenome / Metatranscriptome | 1666 | Y |
| F000893 | Metagenome / Metatranscriptome | 846 | Y |
| F003015 | Metagenome / Metatranscriptome | 513 | Y |
| F004588 | Metagenome / Metatranscriptome | 432 | Y |
| F006637 | Metagenome / Metatranscriptome | 368 | Y |
| F007888 | Metagenome / Metatranscriptome | 343 | Y |
| F008167 | Metagenome / Metatranscriptome | 338 | Y |
| F013105 | Metagenome / Metatranscriptome | 274 | Y |
| F031577 | Metagenome / Metatranscriptome | 182 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0209010_1000009119 | F000192 | AGGAGG | MAANQVVLYFDKQEDALLFTLAASSVMSADGPVHGSDAVVKVAEEICKASRITTEGVLNNSELV |
| Ga0209010_1000009129 | F003015 | AGGAGG | MDCTNHFIAVIGFVLVGLGAVAQQSSTPPATASASANVSTVRGCLDGQRGNYIVVEDKTGLVYVLKGVSNKLDAQLHHEVEVKGRLRSGIIKTGMNPTKSGSNPSDTEHGVDGVPLEVTNVQTDVRTISKHCKAADEE |
| Ga0209010_1000009177 | F007888 | N/A | MSSAVKSHEAERRSTRIRAQIPFRLASLDPEIPFSEQCHTLVVNTEGCGVRLSRPLEAGLSVLLDELPGGTSAPARVANCVPLGTGSNYWLVGIALEQPGNIWCIQPAPADWGIEAKPVVAAVARPKKENEWPYSVFSSKGEAHPGRK |
| Ga0209010_1000009189 | F000893 | GAGG | MLSIHAKIDRTQRLLRMLEEDAPLLAARVAPLTPERQQSAKDYAAQLTAHARAELEKLIEEGSFWDANDRTPQAAD |
| Ga0209010_1000009192 | F004588 | AGGAG | MKIANISKGLLLGLALLLATSTFAATNKGSMQLQDPVTVSGKQLRAGDYSVKWDGSGPNVELSILKGNKVVATTPARLIDLNEKSNRDAAVVQNNGDGSKSLAEIHFSGKKYALTIGSDSASMDGSGSSK |
| Ga0209010_10000092 | F006637 | GAG | MATCPACNQDVATPSFLNLDAWRFLVCPHCKARLEMKAPRSAVLAPLIAPFFILARRGRSFELLAFVFMFATIFLLLLESLHPKVQLRKKSLPKPSIRLDIDGPPN |
| Ga0209010_100000924 | F008167 | N/A | MPPSATLASKPNWYLIPARVLLVTFLLTLLSFATSLLLGILGLVIVAGLRGFHPNMAIAYRHIALPLAAVVAAVTLISASVIEIRRYRQTKALAEIERISAGPM |
| Ga0209010_10000094 | F013105 | GGA | MDTPARAVFKFFAVTLLACPLQAQQAVKPAPTQTAAKSDSGVLTDGIYRNTTFGFTYKTAFGWVDRTREMRDDSNEDSSPDSNAAKSILLLAMFERPPEASGDSVNSAVVVAAEEVASYPGLRSAEQYFGPLTELTKSKGLAVVNEPYEFRVGETQLVRGDFGKPLGNLIMHQSTLVMIEKGYVVSFTFIAGSQDEVDELVEGLSFGRKETPAARK |
| Ga0209010_100000994 | F031577 | GGAG | MIHPQPPMHREDLIKPDLLSEILLVASGLILFVPLLLILVAAFTQSVAMR |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |