Scaffold Ga0209300_1017789

Overview

Basic Information

• Taxon OID: 3300027365
• Scaffold ID: Ga0209300_1017789
• Source Dataset Name: Subsurface microbial communities from deep shales in Ohio, USA - Utica-3 well 1 S input2 RT (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1659
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (83.33%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Deep Subsurface → Subsurface Microbial Communities From Deep Shales In Ohio And West Virginia, Usa

Source Dataset Sampling Location

• Location Name: Ohio, USA
• Coordinates
  • Lat. (^o): 39.849
  • Long. (^o): -81.036
  • Depth (m): 2500

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000263	Metagenome / Metatranscriptome	1424	Y
F001019	Metagenome / Metatranscriptome	804	Y
F009685	Metagenome / Metatranscriptome	314	Y
F022414	Metagenome / Metatranscriptome	214	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209300_10177891	F000263	N/A	HLQRMVNYDINGLDIMHGELKNLMLIWEKELEKAQAIEDESEEAMDSMERKYCEGFLDALTALYKLTYDLSFSIGVREENKKDGH
Ga0209300_10177892	F001019	AGGA	MLSYEPSLEILEVEYSCSPGGVDLFEVYDKTDIPLSVPIYETESLTDAVLYCYNLGKDFTVKTLAEWNERELEYETTR
Ga0209300_10177894	F009685	AGGAGG	MKMSDQYIDSVLAEAQRLLWGGSETENIAAHNLIAKLIKDRMEVISQ
Ga0209300_10177896	F022414	AGGCGG	MSKSPEIKVAEQLTNLMDDHWFNPTIFGRYLAEQPLYTIDRVMEMIASVISEQAKTYQLHKTKGETTEGLLLANELNECIKAYQEHTVISNLKLPKPTVYNVKPKEETKRIQFGWREDKDPFQ