Scaffold Ga0209300_1013215

Overview

Basic Information

• Taxon OID: 3300027365
• Scaffold ID: Ga0209300_1013215
• Source Dataset Name: Subsurface microbial communities from deep shales in Ohio, USA - Utica-3 well 1 S input2 RT (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2111
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (20.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Deep Subsurface → Subsurface Microbial Communities From Deep Shales In Ohio And West Virginia, Usa

Source Dataset Sampling Location

• Location Name: Ohio, USA
• Coordinates
  • Lat. (^o): 39.849
  • Long. (^o): -81.036
  • Depth (m): 2500

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000311	Metagenome / Metatranscriptome	1326	Y
F000980	Metagenome / Metatranscriptome	814	Y
F002935	Metagenome	519	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209300_10132151	F000311	GGA	MYFELTAPDRLSLEMAYWDAQITGLDPEFMPPLTFNVGTGSIEKVSRIRDKYNLKESYWSDREATGY
Ga0209300_10132152	F000980	N/A	MTTTNGTKYTFVCDPDECDSLVELTTVDGFGFPNGVIRNTCPCGREMSYISATILSSEQPTTKEEKMETTETSAVTVPDTYNPNLLVTYKVIRGYSDAEYATDKVTSIEWDLHNARQAQKTNGVYQDKINTVKDIITEAYADSDDQDTLRSIAEALGIELVREVLFTATLEVSGTYTYNVLDSDYELDLDSEVTDALYADSNNGNITIDDTEVCHVREA
Ga0209300_10132153	F002935	N/A	MSVGSCTILLYNNERYKMSSRTKGYIGTLVDGKKLATIANGIYNLQYSSEFSECTVDNLLFIELEEKNVFGDPKYALVCSEGVGWEQDTYGCLEVPTNIGAMGLWNGRVFISVDTVKSCLTDKTEDISDYIRVFGSRLDSNCSLWQSKMSVATATIAQ