Scaffold Ga0209300

Basic Information
Taxon OID	3300027365 Open in IMG/M
Scaffold ID	Ga0209300_1009946 Open in IMG/M
Source Dataset Name	Subsurface microbial communities from deep shales in Ohio, USA - Utica-3 well 1 S input2 RT (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300027365 Open in IMG/M

Scaffold ID

Ga0209300_1009946 Open in IMG/M

Source Dataset Name

Subsurface microbial communities from deep shales in Ohio, USA - Utica-3 well 1 S input2 RT (SPAdes)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	2619
Total Scaffold Genes	10 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	9 (90.00%)
Novel Protein Genes	7 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	7 (100.00%)
Associated Families	7

Scaffold Components

Scaffold Length (bps)

2619

Total Scaffold Genes

10 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

9 (90.00%)

Novel Protein Genes

7 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

7 (100.00%)

Associated Families

Taxonomy
All Organisms → Viruses → Predicted Viral	(Source: DeepVirFinder)

Taxonomy

All Organisms → Viruses → Predicted Viral

(Source: DeepVirFinder)

Source Dataset Ecosystem
Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Deep Subsurface → Subsurface Microbial Communities From Deep Shales In Ohio And West Virginia, Usa

Source Dataset Ecosystem

Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Deep Subsurface → Subsurface Microbial Communities From Deep Shales In Ohio And West Virginia, Usa

Source Dataset Sampling Location
Location Name	Ohio, USA
Coordinates	Lat. (^o)	39.849	Long. (^o)	-81.036	Alt. (m)	Depth (m)	2500
Location on Map

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Source Dataset Sampling Location

Location Name

Ohio, USA

Coordinates

Lat. (^o)

39.849

Long. (^o)

-81.036

Alt. (m)

Depth (m)

2500

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000263	Metagenome / Metatranscriptome	1424	Y
F000441	Metagenome / Metatranscriptome	1136	Y
F000852	Metagenome / Metatranscriptome	860	Y
F001019	Metagenome / Metatranscriptome	804	Y
F022414	Metagenome / Metatranscriptome	214	Y
F084239	Metagenome / Metatranscriptome	112	N
F092053	Metagenome / Metatranscriptome	107	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209300_100994610	F022414	AGGCGG	MSKTQETKLAEQLANLADDHWFNPAIFGRYLAEQPLYTVDRIMEMVSYIISEQAKTYELLKTKGTSSEGLLLANELNECIKAYQEVNVINNLTLPKPTVYHIKREEPVIQRQYGWIDIDKNPFDQV
Ga0209300_10099463	F084239	GGAGG	LTTQTKSSYFMEYLKIHLISLEQDLEQIDYVNAHHFYRVKQAEIENTRHILSVATDIMNNSNERVYG
Ga0209300_10099464	F092053	AGG	MKLSSEVKEDLQDQADQIIYFEAAMSNEDKASKAVYDRLVEIYKVAFKEGAKSK
Ga0209300_10099465	F000263	AGG	MTPEDIGLPPHLQRLVNYDVNGLDIMHGELKNLMLMAEQDLASALEQEELSEEAMDSMVRTECEGRLDTLTELYNLTYQLSFAIAERQGQKV
Ga0209300_10099466	F001019	AGG	MTYEPSLEILEVEYSCSPGGIDLFEVYDKSDIPLSVPIYETESLTDAVLYCYNLGKDFTVKTLAEWNERELAYEATR
Ga0209300_10099468	F000441	AGGAGG	MKMSDQYIDEVLNKAQKLLWGGSETENIEAHNLISKLIKDRVEQVSN
Ga0209300_10099469	F000852	AGGA	MTTKREYLKTQGITVGVRGRFSGAAKVALQEAAAKGITFTAEAPVKKAK

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0209300_1009946

Overview

Ecosystem & Geography

Associated Families

Sequences