NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209300_1004792

Scaffold Ga0209300_1004792


Overview

Basic Information
Taxon OID3300027365 Open in IMG/M
Scaffold IDGa0209300_1004792 Open in IMG/M
Source Dataset NameSubsurface microbial communities from deep shales in Ohio, USA - Utica-3 well 1 S input2 RT (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4458
Total Scaffold Genes8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)6 (75.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Deep Subsurface → Subsurface Microbial Communities From Deep Shales In Ohio And West Virginia, Usa

Source Dataset Sampling Location
Location NameOhio, USA
CoordinatesLat. (o)39.849Long. (o)-81.036Alt. (m)Depth (m)2500
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F012219Metagenome / Metatranscriptome282Y
F050378Metagenome / Metatranscriptome145N

Sequences

Protein IDFamilyRBSSequence
Ga0209300_10047922F012219AGGTGGMNFQNFRIEKEPAPSTDWRVFGDIYDNEGNLVGTFGPDGTSVNIWWVTQDEQFQSQIVEQFSLVMAQQIVSGAAE
Ga0209300_10047924F050378GAGMWVQIGIQAFITTVSIGAAWVALQVRLTRLETQVAHIISTLDGQQQEVRRIEQRLGKLENKVSALEAVINR

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