Scaffold Ga0209300_1004571

Overview

Basic Information

• Taxon OID: 3300027365
• Scaffold ID: Ga0209300_1004571
• Source Dataset Name: Subsurface microbial communities from deep shales in Ohio, USA - Utica-3 well 1 S input2 RT (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4604
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (75.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Deep Subsurface → Subsurface Microbial Communities From Deep Shales In Ohio And West Virginia, Usa

Source Dataset Sampling Location

• Location Name: Ohio, USA
• Coordinates
  • Lat. (^o): 39.849
  • Long. (^o): -81.036
  • Depth (m): 2500

Associated Families

Family	Category	Number of Sequences	3D Structure?
F031872	Metagenome / Metatranscriptome	181	N
F033435	Metagenome / Metatranscriptome	177	N
F095472	Metagenome / Metatranscriptome	105	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209300_10045711	F095472	GAG	MATNWPIKVEVDCPEPRPGLGRVCVGADGTSWDRANSTGWFDSVTNTAMPAPLPVTEAWSSNYSGLYARVPRSAYTLVTGSVWKQMEINAAGDYYLTATTLGTANAEYVKTTASYVANQGWYISAYVPNWVDKSSLPFLRVQWGYGSASTVEMVFRGDGSCIVYKNGIQKGVYDQSDTNKNPGRAVTTASAVGQRQVSLMIIPLKRREVLVTSTFGANFCHMFEDLNDVEGNTILPSGSFAWKVPY
Ga0209300_10045714	F033435	N/A	VYPESLVCQDHNLSSIFDNIPKAEGRPNHVVDIERFIGSPGSFTFREPKASDLFPRPEVQKALKIGFPEFPDQMLQILMIMARCYVIQPGDGEINPGRRFAQLARDRSEIYLYVVGEFAKAFPIDIEAAVDEVPND
Ga0209300_10045716	F031872	GAGG	MVESLVVDEWIYDTLTADATLQGLLAVDNRSPSYQQGIYLYLAPEKDPISLRQPQVPYIVVRHTDNGQDDTTAMCGGRILTSSVHQVWCWDTQSGAVSMARIKAIVNRIDTLLNRQTVNSTTPVFFLNRASVSSSVDVSQDGRVDNGIAQIYVATITPEV