Scaffold Ga0209300_1004310

Overview

Basic Information

• Taxon OID: 3300027365
• Scaffold ID: Ga0209300_1004310
• Source Dataset Name: Subsurface microbial communities from deep shales in Ohio, USA - Utica-3 well 1 S input2 RT (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4786
• Total Scaffold Genes: 9
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (77.78%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Deep Subsurface → Subsurface Microbial Communities From Deep Shales In Ohio And West Virginia, Usa

Source Dataset Sampling Location

• Location Name: Ohio, USA
• Coordinates
  • Lat. (^o): 39.849
  • Long. (^o): -81.036
  • Depth (m): 2500

Associated Families

Family	Category	Number of Sequences	3D Structure?
F008689	Metagenome	329	Y
F013760	Metagenome / Metatranscriptome	268	Y
F028165	Metagenome / Metatranscriptome	192	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209300_10043101	F028165	N/A	YATTGSWSKADNIVRRQSVEKWVRNPELLAYAQSLGYQQMCTDEVAGFAPVTAHYTARMAFSGALVHMRDGKYVCRDGARIHYAVQHGQMVMYKLDGAGNRHHAGAAYFRGADILANDWMIIR
Ga0209300_10043103	F008689	AGGA	MRFSEVIQALMAGGGNAVWRGEWGGAVFLRYSEVWNIFELHGPQKRVTQLEELSLSPGDLFANDWAVVVLDPRTGEVKE
Ga0209300_10043105	F013760	GGA	MIPFAIGALVGAGCVVVWSEMYTRWLYADVKRRAKAQGITDQQMKDALIWATTEEIEESLHGSTTRSR