NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209300_1003832

Scaffold Ga0209300_1003832


Overview

Basic Information
Taxon OID3300027365 Open in IMG/M
Scaffold IDGa0209300_1003832 Open in IMG/M
Source Dataset NameSubsurface microbial communities from deep shales in Ohio, USA - Utica-3 well 1 S input2 RT (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)5157
Total Scaffold Genes9 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)7 (77.78%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Associated Families5

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Deep Subsurface → Subsurface Microbial Communities From Deep Shales In Ohio And West Virginia, Usa

Source Dataset Sampling Location
Location NameOhio, USA
CoordinatesLat. (o)39.849Long. (o)-81.036Alt. (m)Depth (m)2500
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002260Metagenome / Metatranscriptome577Y
F003807Metagenome467Y
F040626Metagenome161Y
F058142Metagenome / Metatranscriptome135Y
F058146Metagenome135Y

Sequences

Protein IDFamilyRBSSequence
Ga0209300_10038323F040626N/AMASILWIDTLGKRYGMLPSEVIGRANTFDLYIMDMALTFENYHHKKSMNNGKEPIPDYTQDELMEMLRKNKEMNNG
Ga0209300_10038324F058146AGGAMKLSQLTAKPQLIDLHIDDEETIKEFGEAIEFWTWDRQPMETFMKLANADHGNTASIVEIVRTLILDEKGKQILTDDQMLPTHVLMKVIAKVTELLGK
Ga0209300_10038325F003807AGGAMSEEKQHDVWLKTDEEKLRSLIADEAKAMPMLDAMQSTIKQLKAKQAFRLALLNQLLDDVIDKE
Ga0209300_10038327F058142AGGAGMAEITYSVLNEPTVTVNQIIAVLKRDIPKAWNIPIYDDFPSDSEVVRYGVYVSDVHTVSRNPHQLGIQFCGAIYHAVDEFNITYISYQDDPYNTAINAIIANLVTAFKNDGVQLMDGYFERNFEQVRTFGPTQAEKHTWTFSLTRLEFNT
Ga0209300_10038328F002260AGGAMSVPYQRISNATVEDIQFYDPAAERRAAALQVDWAPYFKVASQEWLYKLEFGWWQKYCDTVLGAYYYNNLPNGQLISSFNPSLLIKNDQTLIRLDTFGAILVFYESLVTDVSNMNEVDLQNYEFAQKRCDNEWTKALQLMNFYDLYQDSPQGPTTKLEENWTADVDYFNGDRRYF
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