Basic Information | |
---|---|
Taxon OID | 3300027365 Open in IMG/M |
Scaffold ID | Ga0209300_1002000 Open in IMG/M |
Source Dataset Name | Subsurface microbial communities from deep shales in Ohio, USA - Utica-3 well 1 S input2 RT (SPAdes) |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
---|---|
Scaffold Length (bps) | 7737 |
Total Scaffold Genes | 20 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 13 (65.00%) |
Novel Protein Genes | 4 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 2 (50.00%) |
Associated Families | 4 |
Taxonomy | |
---|---|
Not Available | (Source: ) |
Source Dataset Ecosystem |
---|
Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Deep Subsurface → Subsurface Microbial Communities From Deep Shales In Ohio And West Virginia, Usa |
Source Dataset Sampling Location | ||||||||
---|---|---|---|---|---|---|---|---|
Location Name | Ohio, USA | |||||||
Coordinates | Lat. (o) | 39.849 | Long. (o) | -81.036 | Alt. (m) | Depth (m) | 2500 | Location on Map |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
---|---|---|---|
F010684 | Metagenome / Metatranscriptome | 300 | Y |
F011487 | Metagenome / Metatranscriptome | 290 | Y |
F020167 | Metagenome | 225 | Y |
F020910 | Metagenome / Metatranscriptome | 221 | Y |
Protein ID | Family | RBS | Sequence |
---|---|---|---|
Ga0209300_100200011 | F020910 | AGAAGG | MWNKYTFVCDPEECDAMVEFTARDGFGFPLGVVEMKCPCGRMLNYISYEEAYAPIITDVSKVTPRTVVKIDSNPYN |
Ga0209300_100200013 | F020167 | N/A | MTQTMRTIDELVNEMYMDNESHLEYMENMNGGDCDCAIHTTLNTIVKYWWDEEVC |
Ga0209300_100200020 | F011487 | N/A | YYATVCPSCKENSVDEYEDKCTHCLLEEMSYTYNEDIALEMSLGLDY |
Ga0209300_10020006 | F010684 | GAGG | MPSWKVETIFEPTGDYMTFRYEAESDNEEDLCNEILNQLSIVSFKEQD |
⦗Top⦘ |