Scaffold Ga0209300

Basic Information
Taxon OID	3300027365 Open in IMG/M
Scaffold ID	Ga0209300_1001527 Open in IMG/M
Source Dataset Name	Subsurface microbial communities from deep shales in Ohio, USA - Utica-3 well 1 S input2 RT (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300027365 Open in IMG/M

Scaffold ID

Ga0209300_1001527 Open in IMG/M

Source Dataset Name

Subsurface microbial communities from deep shales in Ohio, USA - Utica-3 well 1 S input2 RT (SPAdes)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	9130
Total Scaffold Genes	18 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	6 (33.33%)
Novel Protein Genes	6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (33.33%)
Associated Families	6

Scaffold Components

Scaffold Length (bps)

9130

Total Scaffold Genes

18 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

6 (33.33%)

Novel Protein Genes

6 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

2 (33.33%)

Associated Families

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	(Source: UniRef50)

Taxonomy

All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Deep Subsurface → Subsurface Microbial Communities From Deep Shales In Ohio And West Virginia, Usa

Source Dataset Ecosystem

Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Deep Subsurface → Subsurface Microbial Communities From Deep Shales In Ohio And West Virginia, Usa

Source Dataset Sampling Location
Location Name	Ohio, USA
Coordinates	Lat. (^o)	39.849	Long. (^o)	-81.036	Alt. (m)	Depth (m)	2500
Location on Map

Zoom:	Powered by OpenStreetMap^©

Source Dataset Sampling Location

Location Name

Ohio, USA

Coordinates

Lat. (^o)

39.849

Long. (^o)

-81.036

Alt. (m)

Depth (m)

2500

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001272	Metagenome / Metatranscriptome	733	Y
F005024	Metagenome / Metatranscriptome	414	Y
F006107	Metagenome / Metatranscriptome	381	N
F009398	Metagenome / Metatranscriptome	318	N
F015720	Metagenome / Metatranscriptome	252	Y
F018171	Metagenome / Metatranscriptome	236	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209300_100152710	F005024	GAG	MRPVVNITVDSSRFDAALKQYLLATTRDLDKAVNARMFYLMVRLFVLVPPKSPASERARIADYLSKPLGDINRKSKKTGKRIGKSRLLRRVHLIAQARERKAGRRGLYGEEMKQAASAVYRKAIGSVGYLRSGVVKAIRVFNKGFSQYDKPKWKPLVKPAGYKAPKKPNAALVAIANQYGLPAENVAVHKGTRAKGFQAVPGWNPTASVLMQSGIADNQLGRVKSIYDSSMQKAYDDELAELSTHLTDALLANGQVLVDNGIDIK
Ga0209300_100152711	F009398	N/A	MTTIGSSLQQGMTVLQQMLGAPMFIWEGSSIRCIPAAVADANTPVAGGFQDNVTSRILVMFSDWKTCDSTLVSMDSTLYTLDQGTTFSRLQREDSGFVLLENTDRIALTFCKPRPVVGRTLMYQGRTLRILSCRVDASGAYYSLELGAKSK
Ga0209300_100152714	F015720	N/A	MKNTKTTLAGIGAILVAIGGALKALFDGDPATTVDLASTIAAATAGFGLIMAKDAKETEKKPE
Ga0209300_100152716	F001272	N/A	MIKIELTQEQANSLLQLIDVAVKAGGVANARAALPLVDLILNAAQAKPE
Ga0209300_10015278	F018171	GGA	MALYDAAGNLVVTGYVAPDVESYDITHEADTEEVRNSSGEVVGHIGYNNRLTLTLNFIPSGASAANALLAASLPDVNGTCVITGAPVIEIGGYADAINAATGNRWIYSGGGSIKTTQTGKATGTITLKRYTNLTASGAATNL
Ga0209300_10015279	F006107	N/A	MNGVAPRAEKALVDYLASGDWSGAGAGTPSFLTSYSRGLYDDPDEQDTMPNFPRVVVSSTSARPMQRTDLTCEVNMEVELQLSADDTDEADVLTTVAALDSLILPLFDANGASVLDADQDNASGPFTAQFAAPLDFGASSISNRSRTFTRTFTLYCSATL

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0209300_1001527

Overview

Ecosystem & Geography

Associated Families

Sequences