Scaffold Ga0209300_1000994

Overview

Basic Information

• Taxon OID: 3300027365
• Scaffold ID: Ga0209300_1000994
• Source Dataset Name: Subsurface microbial communities from deep shales in Ohio, USA - Utica-3 well 1 S input2 RT (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 12118
• Total Scaffold Genes: 20
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 16 (80.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Deep Subsurface → Subsurface Microbial Communities From Deep Shales In Ohio And West Virginia, Usa

Source Dataset Sampling Location

• Location Name: Ohio, USA
• Coordinates
  • Lat. (^o): 39.849
  • Long. (^o): -81.036
  • Depth (m): 2500

Associated Families

Family	Category	Number of Sequences	3D Structure?
F029047	Metagenome	189	Y
F057151	Metagenome / Metatranscriptome	136	Y
F068473	Metagenome	124	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209300_100099410	F057151	GAGG	MSIPQYFAQLDDNNIVTAVHVVTREFLEENPERYTGVWVETFINLPNKTYAGIGYTYNPTTKDFIAPPVVPFE
Ga0209300_10009945	F029047	N/A	MQEQPYPEYGLSEETRRMLDPTANAMAKHQMAVFDLIDEICRPAHIPYKPKHAELIARLKHLAVDLDLSGQQDAWQAVSEAIEALGG
Ga0209300_10009948	F068473	GAGG	MSAKAQPGVPGARDYIGNSDGPATGKRAGTEEWVRQAAKWSNGACWNNGTFGQRDVKGKPGTMSVHATGRAMDLSYRKMDTKGVAEGRKVSKAFIDVVVANANKLGVQMIIDYWPQPFGRAWRCDRQAWKAYETKTVSGAPGGDWWHIELSPAMADNPEAVKTIFQAVFGVSTTA