NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209300_1000985

Scaffold Ga0209300_1000985


Overview

Basic Information
Taxon OID3300027365 Open in IMG/M
Scaffold IDGa0209300_1000985 Open in IMG/M
Source Dataset NameSubsurface microbial communities from deep shales in Ohio, USA - Utica-3 well 1 S input2 RT (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)12211
Total Scaffold Genes34 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)29 (85.29%)
Novel Protein Genes6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)6 (100.00%)
Associated Families6

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Deep Subsurface → Subsurface Microbial Communities From Deep Shales In Ohio And West Virginia, Usa

Source Dataset Sampling Location
Location NameOhio, USA
CoordinatesLat. (o)39.849Long. (o)-81.036Alt. (m)Depth (m)2500
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000354Metagenome / Metatranscriptome1244Y
F000652Metagenome / Metatranscriptome959Y
F004978Metagenome / Metatranscriptome416Y
F018539Metagenome234Y
F022196Metagenome / Metatranscriptome215Y
F043926Metagenome155Y

Sequences

Protein IDFamilyRBSSequence
Ga0209300_100098510F022196AGGAMTQKSIPSSTGGVITYTKTGLIHTAGKAYSGKIAAQEAKQKGK
Ga0209300_100098511F000354GGAGMSKVNYDSFSSFDINECCDHFDSEKQSNWKKIGKFIVADGQEYNEVMLKDFDYDEVNEGEWEAFHAGVKYALSKMNIALDAADLPLEIAEVDLVESFGYMLVRTDDTPESFVKRVMKKPVVMVESWVD
Ga0209300_100098522F004978AGGAGMITADTIEVLTSYSPQYLTRAAQLSGYKGPNFLACKFLGITNGGQFCYQAVFPVKDGTDSTKVFLSYDHDEDRVIADYQLTEW
Ga0209300_100098526F000652GGAGMKVLVTTILRQELEVPDNWEKAHVLDFLAEYQSFRTAFQGVSNEDQTARIIDIGVVDEEIAELSEGPY
Ga0209300_100098531F043926GGAGMIKWECQMFYGKKLYTGHYWTDELSLARARRKVAELQRYHPSMRFVLTDWEKGSIIDLHTNTKELA
Ga0209300_100098534F018539AGGAGMLSNAFNTLAKAKLVYNRNKELYKLVVAFNVHTKIKENGDIVHIFPTQAKCAYVSGDINYEELQKEVSRLTE
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