Scaffold Ga0209300_1000939

Overview

Basic Information

• Taxon OID: 3300027365
• Scaffold ID: Ga0209300_1000939
• Source Dataset Name: Subsurface microbial communities from deep shales in Ohio, USA - Utica-3 well 1 S input2 RT (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 12626
• Total Scaffold Genes: 17
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 12 (70.59%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Deep Subsurface → Subsurface Microbial Communities From Deep Shales In Ohio And West Virginia, Usa

Source Dataset Sampling Location

• Location Name: Ohio, USA
• Coordinates
  • Lat. (^o): 39.849
  • Long. (^o): -81.036
  • Depth (m): 2500

Associated Families

Family	Category	Number of Sequences	3D Structure?
F048000	Metagenome / Metatranscriptome	149	N
F100670	Metagenome	102	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209300_10009397	F100670	GAGG	MPAWLLSLLGSFGTEAGTAAATELGAQAVMGGGAPASIGSSIGNMVNQQIAPTVEAFKGITDPNATMGDMANSAFKYSFNPKEDEKSLMLPQAGMAYGGMANNYVGGIPSLLQNTGSGILPYIGSR
Ga0209300_10009399	F048000	N/A	MDDLEINLARGDRARLLLEDELLNEMLKRIEDDCYREIRSSKLMEGPIREQAYLLLTTIDILRSKLRSVMDTGKMAEVALVRRRGRPPKAE