Scaffold Ga0209300_1000337

Overview

Basic Information

• Taxon OID: 3300027365
• Scaffold ID: Ga0209300_1000337
• Source Dataset Name: Subsurface microbial communities from deep shales in Ohio, USA - Utica-3 well 1 S input2 RT (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 26431
• Total Scaffold Genes: 32
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 27 (84.38%)
• Novel Protein Genes: 9
• Novel Protein Genes with Ribosome Binding Sites (RBS): 7 (77.78%)
• Associated Families: 9

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Deep Subsurface → Subsurface Microbial Communities From Deep Shales In Ohio And West Virginia, Usa

Source Dataset Sampling Location

• Location Name: Ohio, USA
• Coordinates
  • Lat. (^o): 39.849
  • Long. (^o): -81.036
  • Depth (m): 2500

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001733	Metagenome / Metatranscriptome	644	Y
F006623	Metagenome / Metatranscriptome	368	Y
F031872	Metagenome / Metatranscriptome	181	N
F033435	Metagenome / Metatranscriptome	177	N
F039641	Metagenome / Metatranscriptome	163	N
F042901	Metagenome / Metatranscriptome	157	Y
F049628	Metagenome / Metatranscriptome	146	N
F059968	Metagenome / Metatranscriptome	133	N
F066786	Metagenome / Metatranscriptome	126	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209300_10003371	F066786	N/A	KYKMVVMASTLQICAACESKRSIERAWSLTQRLLEPNPIVMSGSEKQIEWARSIRTTKYEALAHVLDCLRKAYETRQGEWPAIARAISPVVNDVSIWRSYSQAGAIIDRRNINWTTAFRNALSRAGLHIGGLV
Ga0209300_100033711	F033435	AGGA	LRSIFDNIPKLEGRPNLVVDIERFIGTPGSIVFREPKASDLFPRPEVEKMLKIAYPEFPAQMLQILMIMARCYVIQPGDGEINPGRRFAQLARDRSDIYLYVVAEFARAFPIDFAAAVDEVPND
Ga0209300_100033713	F031872	GAGG	MVESLVVDEWIYDTLTADATLQGLLAVDNRSPSYQQGIYLYLAPEKDPISLRQPQVPYIVVRHIDAGQTDTTSMCGGRIVTTSSHQVWCWDTQSGAVSMARIKAIVDRIDTLLNKQSVNSTTPVFFLNRASVSSSVDVSQDGRVDNGIAQIYVATITPEV
Ga0209300_100033717	F006623	AGGTGG	MNLQNYRLEPSATTPGDWIVFGDITDNEGNLLGTFGPDGTSIFTWWVTQDVSFQQQYSNQFAVIMAQEIVTGTAE
Ga0209300_100033718	F001733	GGAGG	MNSISIKRLVVVVIVAFTAAFTSVFGDGVRTSEAKDISELGAVLALYGSKAVAAGVSAAVSSVLAFLTMPFKGTNANSLKVGK
Ga0209300_100033720	F039641	N/A	MIPAAYSTALKNAIQAYSYADRVAIWRTVNQADGIGGVSQHWIQVAEIRGTISNTGDTEGIVGGMIEQSGTWTLTCSPDIEVRADDRIYTSGNPQALSPYYECIGSDYGHTNAVSQTIGLRARTNG
Ga0209300_100033728	F049628	GGA	MKFSEVIQPLMHGKPITRVCFDHDVYIRYSDLFEAFVMHSGSESKTLQGLTLDPESLFADDWMWGDDHPVKDEITWTRTTS
Ga0209300_100033729	F059968	GGAG	MSKNTNIEERKLLMVRIKDLRAAGHNIRRTAEIMDMSEKTLHRWIREENPDRPVKKMDPYISLDEKTATVIKWAELIASGETRSKAAEIVGYPVMMINRWLMSEPSLRIEFQECIGKKQNNWGGRKSFDQILADVRAGRPVWRDGARFKIQLVESALMRYELDGANVWRCKGFATLSGNDVLARDWTVIE
Ga0209300_10003375	F042901	GGA	MARKQSDNKDVTDGPVRVAEKPEGLLWLLKASEHEILERLNQDGALIFIHPALDGIVSFRIEENPQHEQKVVHVWR