Scaffold Ga0209300_1000214

Overview

Basic Information

• Taxon OID: 3300027365
• Scaffold ID: Ga0209300_1000214
• Source Dataset Name: Subsurface microbial communities from deep shales in Ohio, USA - Utica-3 well 1 S input2 RT (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 35171
• Total Scaffold Genes: 45
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 37 (82.22%)
• Novel Protein Genes: 10
• Novel Protein Genes with Ribosome Binding Sites (RBS): 9 (90.00%)
• Associated Families: 10

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Deep Subsurface → Subsurface Microbial Communities From Deep Shales In Ohio And West Virginia, Usa

Source Dataset Sampling Location

• Location Name: Ohio, USA
• Coordinates
  • Lat. (^o): 39.849
  • Long. (^o): -81.036
  • Depth (m): 2500

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001733	Metagenome / Metatranscriptome	644	Y
F031872	Metagenome / Metatranscriptome	181	N
F033435	Metagenome / Metatranscriptome	177	N
F039641	Metagenome / Metatranscriptome	163	N
F042901	Metagenome / Metatranscriptome	157	Y
F049628	Metagenome / Metatranscriptome	146	N
F050378	Metagenome / Metatranscriptome	145	N
F059968	Metagenome / Metatranscriptome	133	N
F065785	Metagenome / Metatranscriptome	127	Y
F066786	Metagenome / Metatranscriptome	126	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209300_100021410	F066786	AGGGGG	MTQERVDLTWRCGHTAHIMVGYSQSDLKYKMAMMTSTLQICAACENKLAIERAWSLTQRLLEPNPIVMTGSEKQIEWARSIRTTKYEVLAHVLDCLHEAYKTRQDEWPAIARAISPVVNDVSIWRSYTQSGAIIDRRNINWTGAFTNALSRAGLYIGGLK
Ga0209300_100021413	F065785	AGGA	MDIKLSCIECNRPNVVPYGRGHRICGICSQRQLKRERRKQTQRRIQTLGGFVLVVMCVWTACAMASDWNTPNSPDHRAHQAMQARD
Ga0209300_100021420	F059968	GGA	MSKATATEEKAELLVRIKELRAAGNSISRTAQIMCMTRGTVQRWIMEERPEREVKKMDPYVSIDEKTAIVVKWAELIASGESRSSAAASVGFPTMMLNRWLMSEPSLRIEFQESIGKKQNNFGGRKSFEQILADVRAGRPVWRDGGRFKIQLVEAALMRYELDGANVWRCKGFATLSGNDVLARDWTVVS
Ga0209300_100021421	F049628	GGA	MKFSEVIEPLMHGKPVTRASWEHDVYVRYSDLYEAFVMHAIPEPKIIQGITIYPEWMLADDWMWGEFHPVKDEIKWTQTTS
Ga0209300_100021431	F039641	N/A	MIPAAYSNALKNAIQAYSYADRVAIWRTVNQSDGIGGISQHWVQVAEIRATISNTGDTEGIVGGMIEQSGTWTLTCSPDIEVRADDRIYVSGNPQALSPYYECIGSDYGHTNAVSQTIALRARTNG
Ga0209300_100021432	F050378	GAGG	MSPEMWVQIGIQAFITIMSIGAAWVALQVRLTRLETQVAHIISTLDGQQQEVRRIEQRLGKLENKVSALEAIIQR
Ga0209300_100021433	F001733	GGAGG	MNSISIKRLVVVVIVAFVAAFTSVFGDGIRTSEAHDISELGAVLALYGSKAVAAGVTAAMSSVLAFLTMPFKGVEANSLKVGK
Ga0209300_100021439	F031872	GGA	MVESLVVDEWIYDTLTADATLQGLLAVDNRAPSYQQGIYLYYAPEKDPISLRQPQVPYIVVRHLDAGQTDTTSVCGGRIVTTSSHQVWCWDTQSGAVSMARIKGIVDRIDTLLNKQSVDTTTPVFFLNRASVSSSIDVSQDGRVDNGISQVYVATITP
Ga0209300_100021441	F033435	AGGA	LSSIFDNIPKLEGRPNHTVDIERFIGAPGSFTFREPKASDLFPRPEVEKMLKIAFPEFPAQMLQILMIMARCYVTQPGDGEINPARRFAQLARDRSDIYLFVVGQFAAAFPINIEEAVDEVPND
Ga0209300_10002145	F042901	GGA	MARKQSDNKDITAGPVRVAEKPEGLLWLLKASEHEILERLHQDGALIYIHPALDGVVSYRIEENPAHDQKVVHVWR