NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208320_1000042

Scaffold Ga0208320_1000042


Overview

Basic Information
Taxon OID3300027362 Open in IMG/M
Scaffold IDGa0208320_1000042 Open in IMG/M
Source Dataset NameSoil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMZT299 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)19519
Total Scaffold Genes23 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)19 (82.61%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Sediment → Unclassified → Unclassified → Soil → Soil And Sediment Microbial Communities From The East River, Co, Usa

Source Dataset Sampling Location
Location NameUSA: East River, Colorado
CoordinatesLat. (o)38.8895Long. (o)-106.9086Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F025043Metagenome / Metatranscriptome203Y
F096805Metagenome104Y

Sequences

Protein IDFamilyRBSSequence
Ga0208320_100004216F096805GGAGMPKGAALSEVSSGENISHFAAIRVRVTGSGNLKMAVSSLDDLKTKTLVPFSMIAANRIIQTRLVNFMEQRASFELKTTEIDEHFRINRIVVFMKETFTSYPGS
Ga0208320_10000429F025043GGAGMQVGEFPGLQQTNRRTIRAPINPLDKSTVVSILPKTISERKATITPGFFEIPPGSFENPSLLVIGPSSWWREVDENQPLLEIPVSSIQVADSIVRDYANGLLACNMADQMPGIFYIPGEWTVAKLKAEHSPLLLKAQAGQKKWFLELVRIADILWSRSNGNPLSISDDARLACKQLNITQKPWLGDLQTAELVRCVACGSLRNQLFPICQTCKAIADPVRAKELGITFAQ

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