Scaffold Ga0209589_1032677

Overview

Basic Information

• Taxon OID: 3300027357
• Scaffold ID: Ga0209589_1032677
• Source Dataset Name: Root nodule microbial communities of legume samples collected from California USA - Cow pea white BW (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2537
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (20.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Mycobacteriaceae → Mycobacterium → Mycobacterium tuberculosis complex → Mycobacterium tuberculosis (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Root Nodules → Root Nodule Microbial Communities Of Legume Samples Collected From Usa, Mexico And Botswana

Source Dataset Sampling Location

• Location Name: California, USA
• Coordinates
  • Lat. (^o): 34.0722
  • Long. (^o): -118.4441
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000010	Metagenome	7424	Y
F012951	Metagenome	275	Y
F028433	Metagenome	191	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209589_10326771	F000010	N/A	QARIKFSTGQCVKEVLCDIAPTNSCHILLRWAWLHFQTLNLDKRSLYLRYEGHEMKLKFITPRQAKKDQHTLKEKIEKERIEKEEI
Ga0209589_10326773	F028433	GGA	LLVTXVSPPIFGLQHCCRFRKRMQLNMGALRLDTLFTTTVSIIFSFTSFYFSSISLPSAVYISSFSILSFSIFCFNVCXSFLACLCVINFNFISCPSCHKQRERLSRLSVLKXSHAHLKRIXQEFVGAISHNTSLTHCHVLNLIHAXFG
Ga0209589_10326775	F012951	N/A	MPISNEYDKSSLEQYHIILLSHIVMYXIXSLLDSDKTLLVTXASPPILGLQHCCRFRKRMQLNMGGLRLDTLFTTTVSIIFFFTSFYFSSISLPSAVYISSFSILSFSIFCFNVCXSFLACLCVINFNFISCPSCHKQRERLSRLSVLKXSHAHLKRIXQEFVGAISHNTSLTHCHVLNLIHAXFG