Scaffold Ga0255087_1029704

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

x

This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK

Scaffold Ga0255087_1029704

Scaffold Ga0255087_1029704

Overview

Basic Information
Taxon OID	3300027337 Open in IMG/M
Scaffold ID	Ga0255087_1029704 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Columbia River, Oregon, United States - Colum_Miss_RepA_8d
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	1118
Total Scaffold Genes	3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	2

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → River → Unclassified → Freshwater → Freshwater Microbial Communities Amended With Dissolved Organic Matter (Dom) From Various Rivers In The United States

Source Dataset Sampling Location
Location Name	USA: Oregon
Coordinates	Lat. (^o)	46.1812	Long. (^o)	-123.1834	Alt. (m)		Depth (m)	5
Location on Map

Zoom:	Powered by OpenStreetMap^©

Associated Families

Family	Category	Number of Sequences	3D Structure?
F015582	Metagenome / Metatranscriptome	253	Y
F067662	Metagenome / Metatranscriptome	125	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0255087_10297041	F067662	N/A	MIPPSKTETIKTIADLKAYFVEVDELNRYNAVTAVRTTKEIATELLLDNVSIIRGGKIRYFQIKHIGLEVYAVKLRDNNRVNTILVENWQELVINNTEYFXNKIISYFYKNTNY
Ga0255087_10297042	F015582	N/A	MPDIDPELQSEQLEDAKYLEELNHYVNTLSAPSAESVALYRAKLSMLEDIHTEIRAKYPDFMPEYDPLSDPEYNQAVDKYQETTYSFSSRDLHSRSNSXKKPLTLARNSLNCIPHEETPKGIHR

© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.