NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0255138_1034390

Scaffold Ga0255138_1034390


Overview

Basic Information
Taxon OID3300027333 Open in IMG/M
Scaffold IDGa0255138_1034390 Open in IMG/M
Source Dataset NameFreshwater microbial communities from St. Lawrence River, New York, United States - Law_Colum_RepA_8d
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)900
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (25.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → River → Unclassified → Freshwater → Freshwater Microbial Communities Amended With Dissolved Organic Matter (Dom) From Various Rivers In The United States

Source Dataset Sampling Location
Location NameUSA: New York
CoordinatesLat. (o)45.0061Long. (o)-74.7949Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F015209Metagenome256N
F074878Metagenome / Metatranscriptome119N

Sequences

Protein IDFamilyRBSSequence
Ga0255138_10343901F074878N/AAYTIAMNTTDKVIVKFRSRTPRMVYSVYFNGMLLTSGYDAQQLGEDYAKKYGVEWLLQDGDKFYSQKGLVK
Ga0255138_10343904F015209N/AMNNYRRKALSLWSALLAEERWHKFESTNCKPSCKGWNGWAPYCECFENHCTFVPKGEIEDMELVIVAKPIDDVLRNYLY

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