Scaffold Ga0255138_1001975

Overview

Basic Information

• Taxon OID: 3300027333
• Scaffold ID: Ga0255138_1001975
• Source Dataset Name: Freshwater microbial communities from St. Lawrence River, New York, United States - Law_Colum_RepA_8d
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4804
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 2

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → River → Unclassified → Freshwater → Freshwater Microbial Communities Amended With Dissolved Organic Matter (Dom) From Various Rivers In The United States

Source Dataset Sampling Location

• Location Name: USA: New York
• Coordinates
  • Lat. (^o): 45.0061
  • Long. (^o): -74.7949
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F043929	Metagenome / Metatranscriptome	155	N
F048936	Metagenome / Metatranscriptome	147	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0255138_10019751	F048936	N/A	MINLDVKWSDVYEIESKSGMPLWTRHWLIPMNCRNEFFVYWKSNSFKLKEKGYGVKKIDNDWLLTETHTTEDHFSKKKVVNTVKSDEPLKSYEVKTTDGLRPWQVNAVSKLCSAIKKW
Ga0255138_10019752	F043929	N/A	MYKCMNKFYIIDTTQRNEPFIFENVQGLITHLEGTVKRKFGQTRANYMQNLIELGHGDDDREGRTFTESMRTIFNIGIVSKGGILKNCNIHDVAHYSKYRTEMGD