NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0207777_1000862

Scaffold Ga0207777_1000862


Overview

Basic Information
Taxon OID3300027330 Open in IMG/M
Scaffold IDGa0207777_1000862 Open in IMG/M
Source Dataset NameTropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico - Sample 35 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)8333
Total Scaffold Genes8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)8 (100.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → unclassified Acidobacteriaceae → Acidobacteriaceae bacterium KBS 83(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil → Tropical Forest Soil Microbial Communities From Luquillo Experimental Forest, Puerto Rico

Source Dataset Sampling Location
Location NameLuquillo Experimental Forest Soil, Puerto Rico
CoordinatesLat. (o)18.0Long. (o)-65.0Alt. (m)Depth (m).1
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F102308Metagenome / Metatranscriptome101N
F105715Metagenome / Metatranscriptome100Y

Sequences

Protein IDFamilyRBSSequence
Ga0207777_10008626F105715AGGAMVRAQFHQTNDHLALKLEGRLVSARAVEVKSLVSRHFVPNDLLVDVSEVTSVDPVGERLFLWLRDLQAKFVAETCHARDIRERLQLALQGDADRSVPSLTKMHHPQAAPSPAWASSPDSPGRGLLRRRRICPAYIQRKRR
Ga0207777_10008627F102308AGGAGMSGIHSTKKKMTEAKRASTLEIMVWFEYEHETLSRLALVITGDIGAAELSVCKAREVVTNGATPFPFRKQLTEWLKRVTIEAAITSSLHEIARCESRYRYLNCTHSEHLLNGHDSKLRQFRNLLLHIDPEIVIGELDPLARAVAILRTTGRASILDCILRLRLSLDTVLAANCRAMTWFAEKRTGLTDKATTPRQKLEKP

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