Scaffold Ga0209186_1004316

Overview

Basic Information

• Taxon OID: 3300027325
• Scaffold ID: Ga0209186_1004316
• Source Dataset Name: Marine algal microbial communities from Sidmouth, United Kingdom - Sidmouth_Male2 metaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 9509
• Total Scaffold Genes: 17
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 8 (47.06%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Eukaryota (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Algae → Red Algae → Unclassified → Unclassified → Marine → Genome And Metagenome Analysis Of Marine Red Algae Porphyra

Source Dataset Sampling Location

• Location Name: Sidmouth, United Kingdom
• Coordinates
  • Lat. (^o): 50.677
  • Long. (^o): -3.24
  • Depth (m): 2

Associated Families

Family	Category	Number of Sequences	3D Structure?
F043749	Metagenome	155	Y
F052352	Metagenome	142	Y
F069630	Metagenome	123	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209186_100431611	F069630	N/A	MARGLGRLRKDVSATFGRDAEWDGTPALGVFGFLNRCVKAGNDNDVSEGRALYLLPEFTKGDLERESYTIMPSLQGGRSGEVSSFMELVNWLLRKYADEQSLSDQDALFHGASWKDGEAETRRPRPC
Ga0209186_10043162	F052352	N/A	MRRWSDKTIRCYLAEHQKQWDSHLSLLTTAYNTQVHASTGEIPFAFVSPRRLQLIGMERMPWLRQAEERTEDASTAAEQYVQDLRALIRAVRQQPGKAEATYKPAFDTRTKEKNNSVKAGDWVYPDAHSRSPKKIGCKTQGPYMVLQTNGHRFLVESLKGLRTVSSYHVTGAPAPPAPDGKCRRAVRAKALFNLGDQIMEGPEFVLERFPNHGVDDEGQLKVLVKWFGFPEQEAMLQLASSISREAIRIYCLRERVKLLALTREGVFFSDQVGRRPLKGPDDFKSLAKRRAQEESLSLLFPTGPDTSES
Ga0209186_10043168	F043749	N/A	MPSSSYKLVVRLFLTEVFDLTTRAILDTGSGPTLISLRLLPDDTQLQPLGEWASMFHDVNGGSLPTVGSVCLGVALGGQTSYISFGVVDNMNVPAVLGASFMDIAIQNIATQQQHVELLNGIKVPIRRDGARKGHPIASVSAVCACS