Scaffold Ga0209186_1002868

Overview

Basic Information

• Taxon OID: 3300027325
• Scaffold ID: Ga0209186_1002868
• Source Dataset Name: Marine algal microbial communities from Sidmouth, United Kingdom - Sidmouth_Male2 metaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 12062
• Total Scaffold Genes: 12
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 9 (75.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Eukaryota (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Algae → Red Algae → Unclassified → Unclassified → Marine → Genome And Metagenome Analysis Of Marine Red Algae Porphyra

Source Dataset Sampling Location

• Location Name: Sidmouth, United Kingdom
• Coordinates
  • Lat. (^o): 50.677
  • Long. (^o): -3.24
  • Depth (m): 2

Associated Families

Family	Category	Number of Sequences	3D Structure?
F013163	Metagenome	273	Y
F024246	Metagenome	206	Y
F027729	Metagenome	193	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209186_10028681	F027729	GGAGG	LDIGGYPETVSSNHVTAAPGPPGDPQTLLQSLGVPHDVVVPEGHQNTGKEFVWEAFVAHGVADDGTLRLWTRWWGYHPEEDTLELASRFDLRKVQQYMRRVGLRVEETGSVVELLA
Ga0209186_10028685	F013163	GGCGG	LSTYAEPHALGLAQDKFSRATLVDIEAVDAFATRLRSLAVLCGNIHSEGTMKQQLIQGLPEYLRTDAFVYNTAQRSYQHFTTYVAGKYRAAKDVMALANRGSPGGSSRKGQTSTGPRGLSVNHLNSPWEEDDTDTHDVVAVLPWGTPGFRTVGAAPDPRREATTGPPLCYMCWTRGHRVPDCKILTDKQRDIVKSARSTFLRQRNGGAGAASDRTAVVALLWDDLLGGAESTKTEGGDVPPVPTPSKGRRGAGNA
Ga0209186_10028688	F024246	GGCGG	LWFSQPPYYMFEFFTLEGFIWLAHLVWPLWPLALGLVRGLLTVGRPSPSPFDKTNCALDYDSPLGFSVILYSCWRKAGLWVDFRGRSFDGPS