Scaffold Ga0208923_1000251

Overview

Basic Information

• Taxon OID: 3300027320
• Scaffold ID: Ga0208923_1000251
• Source Dataset Name: Estuarine microbial communities from the Columbia River estuary - Freshwater metaG S.575 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 12637
• Total Scaffold Genes: 22
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 9 (40.91%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Intertidal Zone → Estuary → Estuarine → Estuarine Microbial Communities From The Columbia River Estuary, To Analyze Effect Of Nutrient Fluxes, A Time Series

Source Dataset Sampling Location

• Location Name: Columbia River Estuary, USA
• Coordinates
  • Lat. (^o): 46.2
  • Long. (^o): -123.94

Associated Families

Family	Category	Number of Sequences	3D Structure?
F011222	Metagenome / Metatranscriptome	293	N
F023103	Metagenome	211	N
F041023	Metagenome	160	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0208923_100025118	F041023	N/A	VDEQTDPQGARGMTAEERHDAECEFTRNLLCGMVQQAVEDLRSEKIFMSKQLNEHQERDRDTALHFIRSKAFQGICDVLALPADKIKTKALKYESRD
Ga0208923_10002512	F011222	N/A	MDTNKKFFHTINLKAAVALATMGFKMNFPPVTRLVRTDGKESTEFWFEGENAKGQDASQVYRQMTKEGDELEEKDPENPLCYIRAALANRDVLVDIIRNTPRLIEIEHNGKRIAISENASDKTKQEMTRFLK
Ga0208923_10002515	F023103	GAGG	MAKFKFESVKFEQIMADYATIREVTIPDAVSLNARLLCVELARRTQPFGEEQTSGTIRVKNDIGKIIKPPVQLLAMANKVENKKIAQRLKSLIMSQRYDIVETIFRNLGFLNKWTGLEFLDSKGAIKTHHQDARVKPTGRTKTRGSKLFISSGSELNTYITEIQKRVGISKGGWAECASQLKKVNKGGLLTGFPSWVKKATRSGSGSVQDLTSNIKSPKVTLINNVPWVSQILPASEQLNALSVVSTKMRNQMNTILKKRQKTLVET