Scaffold Ga0208949_1019658

Overview

Basic Information

• Taxon OID: 3300027315
• Scaffold ID: Ga0208949_1019658
• Source Dataset Name: Ammonia-oxidizing marine microbial communities from Monterey Bay, California, USA - CAN11_03_M0_10 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1381
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Vibrionales → Vibrionaceae → Vibrio → Vibrio crassostreae (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Marine → Marine Archaeal Communities From Monterey Bay, Ca, That Are Ammonia-Oxidizing

Source Dataset Sampling Location

• Location Name: Monterey Bay, California, USA
• Coordinates
  • Lat. (^o): 36.25
  • Long. (^o): -122.2099

Associated Families

Family	Category	Number of Sequences	3D Structure?
F010198	Metagenome / Metatranscriptome	307	Y
F017221	Metagenome / Metatranscriptome	242	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0208949_10196582	F010198	GGAGG	MKIANKDGFRYGESAYLIGNEFGLLCVSYGDCESDALDNAADIGYLDCQLMSESDHAEYEINEWHDSYICAGNASEPFWSEYLWIKPASERERVAA
Ga0208949_10196583	F017221	GGAG	MEYIKNDYELQQLALSIALEAIEEVKKHGGDYYELIAQAAASSEHAVYTYKAIMLCANCCTADAEEVLVEHGYERFDSFAHHASVLAEVTIQNAALQEFYELGGEAAA