Scaffold Ga0208949_1017790

Overview

Basic Information

• Taxon OID: 3300027315
• Scaffold ID: Ga0208949_1017790
• Source Dataset Name: Ammonia-oxidizing marine microbial communities from Monterey Bay, California, USA - CAN11_03_M0_10 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1471
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (60.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Marine → Marine Archaeal Communities From Monterey Bay, Ca, That Are Ammonia-Oxidizing

Source Dataset Sampling Location

• Location Name: Monterey Bay, California, USA
• Coordinates
  • Lat. (^o): 36.25
  • Long. (^o): -122.2099

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000245	Metagenome / Metatranscriptome	1468	Y
F005516	Metagenome	398	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0208949_10177901	F005516	AGGA	MKRFKQYLKEFAVQSTSDYVFNVPSGHSGGLKIPISGPMFKRIWPDTIRSTVFHVTDHAGLARLKKLEGGKKTISAFFSMMSRYMESGVATSGGVVVEMDADVVVSASSDIMSEVDKTGRRWVEMSWFANAQRYGTGPAFDKVEKDLNTLIVGLVKKHLPKGKEVQQTKHFGKDQGAAFDIWSNMKHHLKGDGRILRVVI
Ga0208949_10177904	F000245	AGGCGG	MKTFSRFKESKLDDKLDKYVSDEIKKRKLAKHPVNATDDYKMKKGKPAFKFPSPTGEMMIHVWLRPMAKPASKDTKAFNYQLEDK