Basic Information | |
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Taxon OID | 3300027315 Open in IMG/M |
Scaffold ID | Ga0208949_1017790 Open in IMG/M |
Source Dataset Name | Ammonia-oxidizing marine microbial communities from Monterey Bay, California, USA - CAN11_03_M0_10 (SPAdes) |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 1471 |
Total Scaffold Genes | 5 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 3 (60.00%) |
Novel Protein Genes | 2 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 2 (100.00%) |
Associated Families | 2 |
Taxonomy | |
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Not Available | (Source: ) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Marine → Marine Archaeal Communities From Monterey Bay, Ca, That Are Ammonia-Oxidizing |
Source Dataset Sampling Location | ||||||||
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Location Name | Monterey Bay, California, USA | |||||||
Coordinates | Lat. (o) | 36.25 | Long. (o) | -122.2099 | Alt. (m) | Depth (m) | Location on Map | |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F000245 | Metagenome / Metatranscriptome | 1468 | Y |
F005516 | Metagenome | 398 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0208949_10177901 | F005516 | AGGA | MKRFKQYLKEFAVQSTSDYVFNVPSGHSGGLKIPISGPMFKRIWPDTIRSTVFHVTDHAGLARLKKLEGGKKTISAFFSMMSRYMESGVATSGGVVVEMDADVVVSASSDIMSEVDKTGRRWVEMSWFANAQRYGTGPAFDKVEKDLNTLIVGLVKKHLPKGKEVQQTKHFGKDQGAAFDIWSNMKHHLKGDGRILRVVI |
Ga0208949_10177904 | F000245 | AGGCGG | MKTFSRFKESKLDDKLDKYVSDEIKKRKLAKHPVNATDDYKMKKGKPAFKFPSPTGEMMIHVWLRPMAKPASKDTKAFNYQLEDK |
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