Scaffold Ga0208949

Basic Information
Taxon OID	3300027315 Open in IMG/M
Scaffold ID	Ga0208949_1004846 Open in IMG/M
Source Dataset Name	Ammonia-oxidizing marine microbial communities from Monterey Bay, California, USA - CAN11_03_M0_10 (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300027315 Open in IMG/M

Scaffold ID

Ga0208949_1004846 Open in IMG/M

Source Dataset Name

Ammonia-oxidizing marine microbial communities from Monterey Bay, California, USA - CAN11_03_M0_10 (SPAdes)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	3440
Total Scaffold Genes	9 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	3 (33.33%)
Novel Protein Genes	5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (40.00%)
Associated Families	5

Scaffold Components

Scaffold Length (bps)

3440

Total Scaffold Genes

9 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

3 (33.33%)

Novel Protein Genes

5 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

2 (40.00%)

Associated Families

Taxonomy
All Organisms → Viruses → unclassified viruses → unclassified DNA viruses → unclassified dsDNA viruses → Prokaryotic dsDNA virus sp.	(Source: UniRef50)

Taxonomy

All Organisms → Viruses → unclassified viruses → unclassified DNA viruses → unclassified dsDNA viruses → Prokaryotic dsDNA virus sp.

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Marine → Marine Archaeal Communities From Monterey Bay, Ca, That Are Ammonia-Oxidizing

Source Dataset Ecosystem

Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Marine → Marine Archaeal Communities From Monterey Bay, Ca, That Are Ammonia-Oxidizing

Source Dataset Sampling Location
Location Name	Monterey Bay, California, USA
Coordinates	Lat. (^o)	36.25	Long. (^o)	-122.2099	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

Monterey Bay, California, USA

Coordinates

Lat. (^o)

36.25

Long. (^o)

-122.2099

Alt. (m)

Depth (m)

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F009330	Metagenome / Metatranscriptome	319	N
F009856	Metagenome / Metatranscriptome	312	Y
F015079	Metagenome	257	Y
F048232	Metagenome	148	N
F097254	Metagenome	104	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0208949_10048462	F015079	N/A	MVQAQIESIQGKGDWKGKHGTMYTFEVGFNDGTIGEANSKSAEPPYKVGDEAYYEIKSDDQYGKKLKISKNPPPPGGFQQFQPKANPNKDKQIIRGMCFKVAGMAWANQYKHKSFELPHHVMVQGVIALAKEYEQAFNEWMEE
Ga0208949_10048463	F048232	GGA	MLNSETLPYEERVSRIMFLREHRRNLLQAYCKDDVTKKEKDKLRQEIARVQKALKKLDPDGMFPP
Ga0208949_10048464	F009856	N/A	MKYWFEVEDAQRWGLSAAAVLAHLKYWIARNTEAGEDPCMTQSIARMQGHLPFLTFDQIRRALSKLEKGDAIYRKANGFDRRHTYCLAELPQASGEIATSKRQDCHNEERDLPRVHIETNTSKRTRENAREELEYQRPSEEEVVEYFRDIGGTDVADQLGQEFHTHYESTGWIVSGTPMAKWKPKARSWLSRMRNKQSNERRKGFNPAGFTPDGLKDFIDNG
Ga0208949_10048468	F009330	N/A	VTLDGYLSRNYDDLLQAAYRIAGKDGPDLLHEVILQLYQTKQDTIDGLLEREQMKYWVLRVMVNNYNSKTSRYHYKWRKDIERRRKFSRHIVDWWDGDGVAAHRDELLTHIEERLAGLPWFDAEVFAIYFEEGHTLDSFAEATGISRHKLYTTIRRVRKEIQGTGRPDREADEGDGNR
Ga0208949_10048469	F097254	GGA	MSAPDVEAFAQLLPAVDRGVLNRSETRTMYDIFNRTFDANEKPCSCAGKNKRMVKKLRRAYEYSCKS

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0208949_1004846

Overview

Ecosystem & Geography

Associated Families

Sequences