NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0207983_1005537

Scaffold Ga0207983_1005537


Overview

Basic Information
Taxon OID3300027310 Open in IMG/M
Scaffold IDGa0207983_1005537 Open in IMG/M
Source Dataset NameSoil and rhizosphere microbial communities from Laval, Canada - mgHMB (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1384
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Soil And Rhizosphere Microbial Communities From Centre Inrs-Institut Armand-Frappier, Laval, Canada

Source Dataset Sampling Location
Location NameLaval, Canada
CoordinatesLat. (o)45.54Long. (o)-73.72Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F008916Metagenome / Metatranscriptome326Y
F015266Metagenome256Y

Sequences

Protein IDFamilyRBSSequence
Ga0207983_10055371F015266GAGGMLKETDVEAALANCRALINQINAGLSAEEPFVNVSSTAELQLYLEFAASALEKCAPSPRERGEMKIALSYH
Ga0207983_10055372F008916GGAGMSDEFDGLDATEKAGIEAALNRCRDLAAQIASELRNKRSDHVDKLSLADLCASLEHAADVLGQKGRQPVENTPAPVEKGSRARHR

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