Scaffold Ga0207983_1002432

Overview

Basic Information

• Taxon OID: 3300027310
• Scaffold ID: Ga0207983_1002432
• Source Dataset Name: Soil and rhizosphere microbial communities from Laval, Canada - mgHMB (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1981
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Soil And Rhizosphere Microbial Communities From Centre Inrs-Institut Armand-Frappier, Laval, Canada

Source Dataset Sampling Location

• Location Name: Laval, Canada
• Coordinates
  • Lat. (^o): 45.54
  • Long. (^o): -73.72

Associated Families

Family	Category	Number of Sequences	3D Structure?
F027888	Metagenome / Metatranscriptome	193	Y
F031564	Metagenome / Metatranscriptome	182	Y
F042052	Metagenome / Metatranscriptome	159	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0207983_10024321	F031564	N/A	KLAGRMKRRWRVVLLRSKGEILGQVEAPDAEAAKAPAAVQFDLDEIQRNRIMVQELA
Ga0207983_10024322	F027888	AGGA	MTELDVIRKDAIRLAAVVVNLSKKYKPFQERVRVLGHRALNTRQISDLEHVCEELRTVYTRLLRHERSALAQEMADDPDLGLEPTASS
Ga0207983_10024324	F042052	GAGG	MRYIVTVAALILSYAPTASYAQQADVSAPGTHSCDKYLAAVRGHAPGKAREIDHAQEGRFSDDHTLYMAWLEGFFTATNLWVTNEPNVRIKSDDAAIDVWIRKWCEKNPTKTLFQAAAEFVRDQRK