Scaffold Ga0207983_1002217

Overview

Basic Information

• Taxon OID: 3300027310
• Scaffold ID: Ga0207983_1002217
• Source Dataset Name: Soil and rhizosphere microbial communities from Laval, Canada - mgHMB (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2066
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (100.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Soil And Rhizosphere Microbial Communities From Centre Inrs-Institut Armand-Frappier, Laval, Canada

Source Dataset Sampling Location

• Location Name: Laval, Canada
• Coordinates
  • Lat. (^o): 45.54
  • Long. (^o): -73.72

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000037	Metagenome / Metatranscriptome	4230	Y
F004562	Metagenome / Metatranscriptome	433	Y
F017394	Metagenome / Metatranscriptome	241	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0207983_10022172	F017394	GGGGG	MTEVLNEVACDEADQLAPSSDIVLGGSVSQRDTPTSLAALEDRDRRYELQAQQSLTAAFFGDPLPGRSALDRRRAEQARIARQSEA
Ga0207983_10022173	F000037	GAGG	LDKDYLTLKRASASRPSGDCNDDDFDVLADGVVVGRIMKAAAAPEGMSWMWTLAFGHHEDRIPTRGYAATREAAIAAFAKSWRRE
Ga0207983_10022174	F004562	AGGAG	MSTTVLAYLILFMGFITFLAGAFGALMLLFEEVAKTERVPFRYYAMMVALISGGLGLIGIGQGLRLLLLILGKE