Scaffold Ga0208970

Basic Information
Taxon OID	3300027298 Open in IMG/M
Scaffold ID	Ga0208970_1000072 Open in IMG/M
Source Dataset Name	Ammonia-oxidizing marine microbial communities from Monterey Bay, California, USA - C0912_C49A8_35 (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300027298 Open in IMG/M

Scaffold ID

Ga0208970_1000072 Open in IMG/M

Source Dataset Name

Ammonia-oxidizing marine microbial communities from Monterey Bay, California, USA - C0912_C49A8_35 (SPAdes)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	35054
Total Scaffold Genes	67 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	41 (61.19%)
Novel Protein Genes	5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (40.00%)
Associated Families	5

Scaffold Components

Scaffold Length (bps)

35054

Total Scaffold Genes

67 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

41 (61.19%)

Novel Protein Genes

5 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

2 (40.00%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Marine → Marine Archaeal Communities From Monterey Bay, Ca, That Are Ammonia-Oxidizing

Source Dataset Ecosystem

Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Marine → Marine Archaeal Communities From Monterey Bay, Ca, That Are Ammonia-Oxidizing

Source Dataset Sampling Location
Location Name	Monterey Bay, California, USA
Coordinates	Lat. (^o)	36.25	Long. (^o)	-122.2099	Alt. (m)	Depth (m)
Location on Map

Zoom:	Powered by OpenStreetMap^©

Source Dataset Sampling Location

Location Name

Monterey Bay, California, USA

Coordinates

Lat. (^o)

36.25

Long. (^o)

-122.2099

Alt. (m)

Depth (m)

Location on Map

Zoom:

Family	Category	Number of Sequences	3D Structure?
F001839	Metagenome	628	Y
F008915	Metagenome / Metatranscriptome	326	Y
F015659	Metagenome	253	Y
F026438	Metagenome	198	N
F059875	Metagenome	133	Y

Family

Sequences

Protein ID	Family	RBS	Sequence
Ga0208970_100007229	F001839	GAG	MKYFEKVDKDLINNRALNSHEKLIYIICKSFENAPRGCRISHKYLMQRTGIKTQPTLIRCLDRLTLFGMLARKQIENGTCHYVFDKPTMQEYIQHNLNKRRRISLSKNRHNRNLNTALSSPNVINIGKVIK
Ga0208970_100007232	F008915	N/A	MGFIVDNEITLDLYEMQSASHLGILRCLESKKHKENWGYNYKGSLNDQMAKSISGAMGEVAASKFLGIKFEYHCNVGGVPDLIFKDLRLQVRTQIPKNNNSLIIRPKAKQDEFYILVIDEAPKFKILGFVNSTYVLGQEQWKTTFGLDRPFCYSIPPEKLTPINLLKDSTWN
Ga0208970_100007233	F059875	N/A	MKTLVLIFGVITNDGQIELVKVPDIALKNINSCEKAIETHTKWVDNPDFDNNPLPHGFYTYKNKVVMLQYCTENGVYSG
Ga0208970_100007235	F026438	N/A	MANHINVIGDSYTKFGLKHTSKSTACLPHTIRFFKKHILTPKENSEISNASFIGGTLIHMIVQESLTKKLSLDEVIKSELIQTKIDNYEPNDEKDKKKFEFIVKAAKETAQNHLDNIDDLGQYEWSDEQEQVLWTPPVNTYWLMYIDLIGKLAKAKDPEVLGDLKNKFGTVTLTKTKGWTYTNVKCPDRPFYSDVQQISLYQKATGLKPFLSYASNCDRKLFTQDNCEDLKQENLDKALKELMIYEIAWEKKLELADGDLDKLAWLCCPDFSDIKKKSFWWTGVAQEQIDRLLKHYE
Ga0208970_100007237	F015659	AGGAG	MIERSLKDAIQQFRKNIDDSDYANLGAKGKYLTVPYRIKFVRDYFGERMSIQTDSTELANGSHKFRANIYIDDKLVSVGESKQMKNADKEFEKQQTVSIGRGLSILGFFGDELATAEEMEQFLKPQKKVVKDKTFENGHKVNYPKDEPEEEKKIKPKLSIEQMANDWIDVLKKTATHSVSVGKFEQNLNPLRKEYINELQTIYTDLIQQQRIDTAYISLQKQITNRKQ

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0208970_1000072

Overview

Ecosystem & Geography

Associated Families

Sequences