NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0208241_1002307

Scaffold Ga0208241_1002307


Overview

Basic Information
Taxon OID3300027297 Open in IMG/M
Scaffold IDGa0208241_1002307 Open in IMG/M
Source Dataset NameForest soil microbial communities from Harvard Forest Long Term Ecological Research site in Petersham, Massachusetts, USA - MetaG HF047 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2272
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil → Forest Soil Microbial Communities From Harvard Forest Long Term Ecological Research (Lter) Site In Petersham, Ma, For Long-Term Soil Warming Studies

Source Dataset Sampling Location
Location NameHarvard Forest LTER, Petersham, MA, USA
CoordinatesLat. (o)42.550409Long. (o)-72.180244Alt. (m)Depth (m)0 to .1
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001497Metagenome / Metatranscriptome683Y
F055935Metagenome / Metatranscriptome138N

Sequences

Protein IDFamilyRBSSequence
Ga0208241_10023071F055935GAGGMGALFILCGILVGLAVYRSGEARARWQSLKASRTTARNQRNTAWRHAGSAALYVVGAIFFLFIVLKLLK
Ga0208241_10023073F001497GAGGMWTYSDGARTVKGYRRPGGTAGAGSWVLVDQGTGNVQGVVPAGEFSRRFRPVDVFADVPELATYLGTVTAPGGTALVDLVLDRNPFMLANGPRRAARPHALVVPRRHRDGWSSATAAELAARQTAMTLVAAWYRSLDGGHVVFCANDSAPNLDYLRDTEAASGILAGSGPDAAITKNPRQDVQHAHLHAFYAEHDRTENHESSALAGHPVIA

 ⦗Top⦘



© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.