Scaffold Ga0209389_1129052

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

x

This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK

Scaffold Ga0209389_1129052

Scaffold Ga0209389_1129052

Overview

Basic Information
Taxon OID	3300027296 Open in IMG/M
Scaffold ID	Ga0209389_1129052 Open in IMG/M
Source Dataset Name	Root nodule microbial communities of legume samples collected from California, USA - Cow pea red BW (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	628
Total Scaffold Genes	2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Root Nodules → Root Nodule Microbial Communities Of Legume Samples Collected From Usa, Mexico And Botswana

Source Dataset Sampling Location
Location Name	California, USA
Coordinates	Lat. (^o)	34.0722	Long. (^o)	-118.4441	Alt. (m)		Depth (m)	0
Location on Map

Zoom:	Powered by OpenStreetMap^©

Associated Families

Family	Category	Number of Sequences	3D Structure?
F080953	Metagenome	114	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209389_11290521	F080953	GAG	LYYFKSFTKNPPLHFQNMQKHHKRLLNHTRITPTQQEPSCRLGKPPSTHTKLEKDQTLVVAQPCLPQTTFSKLQTGSRIDPRSIFNSCNTYDHEGESFHKFPEPIRALKGSTDLSFENHSFYSQTVMKFKRLIFKSIS

© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.