Scaffold Ga0209389_1000352

Overview

Basic Information

• Taxon OID: 3300027296
• Scaffold ID: Ga0209389_1000352
• Source Dataset Name: Root nodule microbial communities of legume samples collected from California, USA - Cow pea red BW (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 27708
• Total Scaffold Genes: 39
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 22 (56.41%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Root Nodules → Root Nodule Microbial Communities Of Legume Samples Collected From Usa, Mexico And Botswana

Source Dataset Sampling Location

• Location Name: California, USA
• Coordinates
  • Lat. (^o): 34.0722
  • Long. (^o): -118.4441
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005662	Metagenome	393	Y
F018329	Metagenome	235	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209389_100035226	F018329	GGTGG	MSREVHIQLLLCWDTSEVGSYVSCSHLRDVACGEVRSWWITCVGLRVGRSVEQDYEHGGS
Ga0209389_100035230	F005662	AGG	MCLVVGHMMGMELVEFPSATNGRGVLSMVIACVGRTMGNELLCSRRLLLGEESIVW