Scaffold Ga0255134_1031249

Overview

Basic Information

• Taxon OID: 3300027292
• Scaffold ID: Ga0255134_1031249
• Source Dataset Name: Freshwater microbial communities from St. Lawrence River, New York, United States - Law_Law_RepC_8d
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 895
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → River → Unclassified → Freshwater → Freshwater Microbial Communities Amended With Dissolved Organic Matter (Dom) From Various Rivers In The United States

Source Dataset Sampling Location

• Location Name: USA: New York
• Coordinates
  • Lat. (^o): 45.0061
  • Long. (^o): -74.7949
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F034568	Metagenome	174	Y
F041003	Metagenome	160	N
F082589	Metagenome / Metatranscriptome	113	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0255134_10312491	F034568	N/A	DGWRTFAYVRDGTPMGLMPITWANELFKTKQQAKKFIDDLATKNGWKK
Ga0255134_10312492	F041003	GGA	MKAWTPPTDYLDPPKPPRHYKYVWLRFDIKTKKFKYPLVRHKQLKNRKRFPFIYIKHYGKCVGIEGLTLAKVKI
Ga0255134_10312493	F082589	GGA	LVSLLKNQQKGNVMQNDKVYEVASDLYFYFIDLYGAREQCVIENDDYSENTELGTELYYQIEDELINNVQPTKN