Scaffold Ga0255134_1001103

Overview

Basic Information

• Taxon OID: 3300027292
• Scaffold ID: Ga0255134_1001103
• Source Dataset Name: Freshwater microbial communities from St. Lawrence River, New York, United States - Law_Law_RepC_8d
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 6025
• Total Scaffold Genes: 9
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (55.56%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → River → Unclassified → Freshwater → Freshwater Microbial Communities Amended With Dissolved Organic Matter (Dom) From Various Rivers In The United States

Source Dataset Sampling Location

• Location Name: USA: New York
• Coordinates
  • Lat. (^o): 45.0061
  • Long. (^o): -74.7949
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002708	Metagenome / Metatranscriptome	535	N
F014500	Metagenome / Metatranscriptome	262	N
F048782	Metagenome	147	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0255134_10011033	F002708	N/A	MKKLQKEFTGNFDRVGNTKFIQLKKENGVAIYERQNMDGSFRSYEVFVVKVIEKGTALPGGNSVQETYEQYPGCAAFGKTAYDCKTIVSAEERFDELVKKVKSINDAKEESIKTGVPVKRGRKASVKMNVKMTLKKDSKFTINMLTTYTGVNIVYIRKAVNEWLESGVITISGVVKSESGRGKPSTEYTVT
Ga0255134_10011034	F014500	N/A	MNNELSAESDLRNMITVDISETMIPEIELTDEELAAADDIRFSDEMAVTMAELPVFTDEQNNRYNDKMTMLADIRNEIPSLKVVVVTEETESYTVPSGRYDYMYSMGTI
Ga0255134_10011038	F048782	GGAG	VTDRYPVTGLHWKLNVVGQEGNEFGLGEYMQCVMVMRPDKEIDVTKVDGSVIEHALKVKGVNRYYVRNSMSRSLFSLFGGFGVDDDVYDDVWRMYNRDPWNRRFPKFVDGSVEDMYINSSYENRVSYGFWVYYRDRVITSNSDIRDDTNYGVRYISEVPVLILHTTTIEGVTVACLDVVNANKI