Scaffold Ga0255135_1016711

Overview

Basic Information

• Taxon OID: 3300027287
• Scaffold ID: Ga0255135_1016711
• Source Dataset Name: Freshwater microbial communities from St. Lawrence River, New York, United States - Law_Atlam_RepA_8d
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 930
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Crocinitomicaceae → unclassified Crocinitomicaceae → Crocinitomicaceae bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → River → Unclassified → Freshwater → Freshwater Microbial Communities Amended With Dissolved Organic Matter (Dom) From Various Rivers In The United States

Source Dataset Sampling Location

• Location Name: USA: New York
• Coordinates
  • Lat. (^o): 45.0061
  • Long. (^o): -74.7949
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001561	Metagenome / Metatranscriptome	670	Y
F024557	Metagenome	205	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0255135_10167112	F024557	N/A	MEPTVWIYFSKTCTGYELKGSDVISGFDAFINMDGTYMVEYAFSDMKSSMHFFIYEWDNSQKKRRTVFESYKKELVLMGMVKHIDKIPLPIAQKILSMYINDEEELELEKNANS
Ga0255135_10167113	F001561	GGAG	MQTREQKLVYLRKTIETLWHGVSDTKTGDYPRIISLYKEVLMHDYHDADSWENMIWLMWSMAVNNKDTVWLFQAEKFAKRYLSLNSNGYRAYEYLGQFYRIMYVDLRLAVRYYESAIRWKDAPKSTHHSLISVCEKSGDKIRAIGYCKMTLARFPNDPYT