Scaffold Ga0209691_1007499

Overview

Basic Information

• Taxon OID: 3300027279
• Scaffold ID: Ga0209691_1007499
• Source Dataset Name: Anoxygenic and chlorotrophic microbial mat microbial communities from Yellowstone National Park, USA - YNP MS-B MetaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3946
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (62.50%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Anoxygenic And Chlorotrophic → Anoxygenic And Chlorotrophic Microbial Mat Microbial Communities From Yellowstone National Park, Usa

Source Dataset Sampling Location

• Location Name: USA: Wyoming: Yellowstone National Park
• Coordinates
  • Lat. (^o): 44.963
  • Long. (^o): -110.715

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006418	Metagenome / Metatranscriptome	373	Y
F010840	Metagenome / Metatranscriptome	298	Y
F043176	Metagenome / Metatranscriptome	156	Y
F051735	Metagenome / Metatranscriptome	143	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209691_10074992	F043176	AGGAG	MLQTYKIWEGERTFLPGDDTGKFTIVEITGEELGWFEDVIDGKTYYVYQTSEGEVVINIVEQSYGIGEPSRAVIFRFRSLEEAAQSEQRYALEELRLI
Ga0209691_10074993	F006418	AGGAG	MPKRRSSPAPRPAREIVIEEGSDYRILFDRESKDYAVEYRGQPVGWRAYVEDARWLVEQLRYEDARRGE
Ga0209691_10074994	F051735	AGGAGG	MFRDVTIINGPVPKDGVADYERLRVKARPLGRPYVWDNGRAWNSYVTNGGFVLVFECEDGTIYVQEIEWEVDPYPDATPDPRTYYYYEVYNSLAEARAGGRGWLIEYALGTE
Ga0209691_10074995	F010840	AGGAGG	VNLPFSQPLDKVTYGALAAATVVILAWALREFAGIDLPAEVQSALALLVGFGISYYVPLSEVEAEAIARKYYKYK