Scaffold Ga0209691_1003540

Overview

Basic Information

• Taxon OID: 3300027279
• Scaffold ID: Ga0209691_1003540
• Source Dataset Name: Anoxygenic and chlorotrophic microbial mat microbial communities from Yellowstone National Park, USA - YNP MS-B MetaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 7208
• Total Scaffold Genes: 15
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 13 (86.67%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Anoxygenic And Chlorotrophic → Anoxygenic And Chlorotrophic Microbial Mat Microbial Communities From Yellowstone National Park, Usa

Source Dataset Sampling Location

• Location Name: USA: Wyoming: Yellowstone National Park
• Coordinates
  • Lat. (^o): 44.963
  • Long. (^o): -110.715

Associated Families

Family	Category	Number of Sequences	3D Structure?
F020180	Metagenome / Metatranscriptome	225	Y
F036248	Metagenome / Metatranscriptome	170	Y
F069555	Metagenome / Metatranscriptome	123	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209691_100354011	F069555	AGGAGG	MRKTIKDQAVKLAAAIREAANPEIEYRIGVFGLELADGSRPPADMLQRIQQLSIRSETVCQWAETNGARRDCKLVRSPHDGAYYFGEYRWLDNNGLRCDVVYYQVPKQLETRIRSLQAIKET
Ga0209691_10035403	F036248	AGGAGG	MLKLFGLEEIRNMMGATEPIEGCLVVEVNLQLMQVAFTTERPSDDEWKWFEYEGEYDPRACIPLFTQTQRPVYGVFLGPVRGGNPLALLSPARGASFGVASFRGGEHRFNLFIHVAAHAAFRDRCVRLGDRLVVNFPYDPNRVARAKSLGGRFFSELKAWVFPAEREEEVKEALLG
Ga0209691_10035406	F020180	GGAGG	MSYDAKRWYVARCSCAKPILYQDLDRYPLRCAKCGGHVYTEPRPPHFERTTPTPIVDMGAILRLLGLGVLGLLGYILICIYFIVLGGL