Scaffold Ga0209691

Basic Information
Taxon OID	3300027279 Open in IMG/M
Scaffold ID	Ga0209691_1003170 Open in IMG/M
Source Dataset Name	Anoxygenic and chlorotrophic microbial mat microbial communities from Yellowstone National Park, USA - YNP MS-B MetaG (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

Scaffold ID

Ga0209691_1003170 Open in IMG/M

Source Dataset Name

Anoxygenic and chlorotrophic microbial mat microbial communities from Yellowstone National Park, USA - YNP MS-B MetaG (SPAdes)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	7862
Total Scaffold Genes	16 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	16 (100.00%)
Novel Protein Genes	6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	6 (100.00%)
Associated Families	6

Scaffold Components

Scaffold Length (bps)

7862

Total Scaffold Genes

16 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

16 (100.00%)

Novel Protein Genes

6 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

6 (100.00%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: UniRef50)

Taxonomy

All Organisms → cellular organisms → Bacteria

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Anoxygenic And Chlorotrophic → Anoxygenic And Chlorotrophic Microbial Mat Microbial Communities From Yellowstone National Park, Usa

Source Dataset Ecosystem

Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Anoxygenic And Chlorotrophic → Anoxygenic And Chlorotrophic Microbial Mat Microbial Communities From Yellowstone National Park, Usa

Source Dataset Sampling Location
Location Name	USA: Wyoming: Yellowstone National Park
Coordinates	Lat. (^o)	44.963	Long. (^o)	-110.715	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

USA: Wyoming: Yellowstone National Park

Coordinates

Lat. (^o)

44.963

Long. (^o)

-110.715

Alt. (m)

Depth (m)

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F000855	Metagenome / Metatranscriptome	859	Y
F001381	Metagenome / Metatranscriptome	709	Y
F002229	Metagenome / Metatranscriptome	580	Y
F002372	Metagenome / Metatranscriptome	566	Y
F004024	Metagenome / Metatranscriptome	456	N
F009403	Metagenome / Metatranscriptome	318	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209691_100317010	F002229	GGAGG	MVTLLTADGVEEVDYTPSDAEIRASLDDPGLYGMVLGVVTWMRLSSGAGWWTVLFGKRLVVTLAPVGWCWVMDGLGNRGYWSATLSAVVADVCAMCGGCVEED
Ga0209691_100317013	F002372	AGGGGG	MPTRREDALWSVVHRRASHLRALLDGLDDVDVSIAYELHYYPYAIVELLRIRDDAPPLALRSVYVQANRQWEYHSEFALRVVEAALQLVHEYRADPSLGGAEAVFV
Ga0209691_10031702	F009403	AGG	VFRITRRGRGSGRAPALSVVRSADGARLEVREGRYGQGALYAYCDVDDTLAAHTLLLTFADMRARVIYIHDSLPLISERKFLDAFSGLGPVLPDADSLPDALPDADDSSSLRMSRSMDGELLDVCGFVDV
Ga0209691_10031704	F000855	AGGAGG	VDWLEDFFSKIVGWLDQISASVHNAIIGWINGLIDIWNGWMDSLLHPAQAMPSNPALRWIVDWLGGIADYTRLMYMLVDYVAYAWIVQQALTAQIGIVIVGLGFRAWLVIRRVVLVS
Ga0209691_10031705	F001381	GAG	MQYVIATLYVLLWFSLAALATLVLPLWALPAALVHLAVAYVMLRAVWLAAVGGDDGA
Ga0209691_10031708	F004024	AGGA	MPSERDYLCQPSSLTDDDMMFLDARATLAAALSRAVVGYSDSRVRALAWLSIATPRLYDRIAPIIESAAIRQSPGASRTLRDALRALSLEEYVRRRDERRSDR

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0209691_1003170

Overview

Ecosystem & Geography

Associated Families

Sequences