Scaffold Ga0209691_1001123

Overview

Basic Information

• Taxon OID: 3300027279
• Scaffold ID: Ga0209691_1001123
• Source Dataset Name: Anoxygenic and chlorotrophic microbial mat microbial communities from Yellowstone National Park, USA - YNP MS-B MetaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 16653
• Total Scaffold Genes: 17
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 15 (88.24%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Terrabacteria group (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Anoxygenic And Chlorotrophic → Anoxygenic And Chlorotrophic Microbial Mat Microbial Communities From Yellowstone National Park, Usa

Source Dataset Sampling Location

• Location Name: USA: Wyoming: Yellowstone National Park
• Coordinates
  • Lat. (^o): 44.963
  • Long. (^o): -110.715

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002970	Metagenome / Metatranscriptome	517	N
F004791	Metagenome / Metatranscriptome	423	Y
F005302	Metagenome / Metatranscriptome	405	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209691_100112312	F004791	AGGAGG	MERIPTEIYDIDAIRVDRSALTIRQAATVLNRELTAPVIARLVRKAIGDQADQFPLRALKSVYERILPQIFEPDEALRARVEGMVPDISRITLGEYHQFLDESERKIAFPPVASTLLVKAYGEDILNEPYAAAALLLKKIFDVVSTEGNE
Ga0209691_100112313	F005302	GGAGG	MSHTGIIDGLFAGNYAVEISTNGTTWTAVSNATVKIDDIELSRPSGEAYVGGSSDYATVTIGKREPVEITLTFLYSEAANSAANTVFDAFQSANPRLGVRWSPRGLVGGARAYATSNDGATFGLGVITGVTHSALDPSDPEPFVAMVTVRAPAIRQYTLPANPTNLNPPA
Ga0209691_100112314	F002970	GGAG	MSSSTVINIVELLAGLAVQYNNATVSVRRLTTQTNWVDAAQLPVRIIPALGGLRLVDGGVYTATRATRAVWEIDDLLLVRDVGMGRGVADTATALVRYIEEYVALLRFAWRVRGDVQLINVSGMIDVVRYGERAYEGVTMTVRFAHLVRAPSA