Scaffold Ga0209846_1002396

Overview

Basic Information

• Taxon OID: 3300027277
• Scaffold ID: Ga0209846_1002396
• Source Dataset Name: Groundwater microbial communities from the Columbia River, Washington, USA - GW-RW S3_20_30 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3291
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (83.33%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Sand → Unclassified → Groundwater Sand → Groundwater Microbial Communities From The Columbia River, Washington, Usa

Source Dataset Sampling Location

• Location Name: USA: Columbia River, Washington
• Coordinates
  • Lat. (^o): 46.372
  • Long. (^o): -119.272

Associated Families

Family	Category	Number of Sequences	3D Structure?
F017449	Metagenome / Metatranscriptome	240	Y
F033708	Metagenome / Metatranscriptome	176	Y
F076050	Metagenome / Metatranscriptome	118	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209846_10023961	F033708	N/A	QGRGREVDVMSRQRRKQRRNAARRPWWRPLVGLGLLAGWLAVSKRGRQAVKAAKEQTAKVSRKLAAARPGGTTTVAPPTDAPPGPVMAEVTKLPQDDSGDGKPGARPDTQTETAAAEPPTSQ
Ga0209846_10023962	F017449	GGCGG	VGRRRTRRPGEISIQPGSGFDKGRSCTCWPRPNDARPCTPQTCDWRCRACRVHGRPFYSHGDLQYLEHGTGPLVAELDRLWWVRGPAKRRTARAGVWPWR
Ga0209846_10023966	F076050	AGGGGG	VDRDAFARSLGELRQGLPGPGDVFATLQRVVDATLAVFQVDGASLALEHEDGSL