Scaffold Ga0209215_1000084

Overview

Basic Information

• Taxon OID: 3300027266
• Scaffold ID: Ga0209215_1000084
• Source Dataset Name: Forest soil microbial communities from Davy Crockett National Forest, Groveton, Texas, USA - Texas A ecozone_OM2H0_M2 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 57545
• Total Scaffold Genes: 53
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 33 (62.26%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil → Forest Soil Microbial Communities From Multiple Locations In Canada And Usa

Source Dataset Sampling Location

• Location Name: Davy Crockett National Forest, Groveton, Texas, USA
• Coordinates
  • Lat. (^o): 31.11
  • Long. (^o): -95.15

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004983	Metagenome / Metatranscriptome	416	Y
F024072	Metagenome / Metatranscriptome	207	Y
F028135	Metagenome	192	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209215_100008429	F024072	AGGA	MKRKGIIFGSVLALIVCGLFYYFYLGSTVPGGQQPLVYLNNANVTSLKDAFNNSANSVRVIVMLSPT
Ga0209215_100008436	F028135	GGAGG	MAKVELQIPSDLGLTRKQMSDLTKSFKKQLVDTLKANQKASKAKSKRIVVDVLAKPKNQV
Ga0209215_10000847	F004983	N/A	MIQKEKIEELLKLPVEERRRVLRLLQESLPDEGEAVVSVTNGDQTSPAAKWLLSMAGRYSGGPGNTAVHADEILRAEIDKNRGLTTN