Scaffold Ga0209215_1000006

Overview

Basic Information

• Taxon OID: 3300027266
• Scaffold ID: Ga0209215_1000006
• Source Dataset Name: Forest soil microbial communities from Davy Crockett National Forest, Groveton, Texas, USA - Texas A ecozone_OM2H0_M2 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 312570
• Total Scaffold Genes: 263
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 191 (72.62%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (100.00%)
• Associated Families: 5

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil → Forest Soil Microbial Communities From Multiple Locations In Canada And Usa

Source Dataset Sampling Location

• Location Name: Davy Crockett National Forest, Groveton, Texas, USA
• Coordinates
  • Lat. (^o): 31.11
  • Long. (^o): -95.15

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001505	Metagenome	681	Y
F007137	Metagenome / Metatranscriptome	357	Y
F010874	Metagenome	298	Y
F015882	Metagenome	251	Y
F057451	Metagenome	136	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209215_1000006158	F007137	AGGAG	MATKATVIKLKVNFQLNTPNGLRRVIFGLEKDATSGTVVTWTINFQLFERAKKSDPFGDAIVTLDVEVDKALNAKAEKAAKGLTAGQSAHALGPAADDAKAAEDGEIDQEDAQQTVQNTLKKK
Ga0209215_1000006167	F010874	GAGG	LTTCPCCGFKFHGALTSGCKQCGARSIGEPLPRPAHELPSYGRALILTVSGSLVALVFVVQTLLAFIQKYTGSFGFWSWVAAGETAAWRLKWIAIPSLFVVLWFGRKLYRSIVSQPERFCGVKYARRGLLSSATVAMLIALLIGITVPARLQHRRLAEEAGIKAQGWTIERALTEYRIKYHTLPADYKILLERIPDPYGSLATALKDLDPREYRPSVDVAAVGTEKSRTLRGAVIRKASLNSATDDTPSGGLAFTNYVLRLPGEDRITGNEDDWVVRDGMIMKLSDIAKGGVGSSVSAGAMEP
Ga0209215_100000661	F057451	AGG	VNARFIVRMDHSRNAPQLAIFQPHLVLLCSLTGAALVGLYLLTSEQVRANVLDPGGTFQYFVPLMVPCFAFMIERVQHVRKANFFQHGVDFLVFGLAVGRVLGREVLHISGHTLLLSYMLVSSRSKIVLIASILVLGQTLFLKYYVWGDFVTSNVGMMAGCALALIVRWVSKRITTGEETGK
Ga0209215_100000666	F001505	GGA	MSDIHLIQKANGETNLPRPAEFDPIRWAQLNPWLSEGQADDRTPMNGSVKNSGETPSVQRSFARRFHQAMFKKWSQTRHDY
Ga0209215_100000674	F015882	GGAG	MTWKEIKKAVEEAGVEEDEEIGLIQRENGDGDHTFHKVRLGKTLKLAENVTPEKAREQAEGCAV